BAC Information

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BAC

Clone NameMSMg01-365P19
Chromosome5 (Build37)
Map Location 63,719,123 - 63,719,568
singlet/doubletsinglet
Overlap genenone
Upstream geneCentd1
Downstream gene3110047P20Rik, LOC100042133, 0610040J01Rik, AA536743, LOC100041636, LOC100041646, Pgm1, Tbc1d1, Ppia-ps22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365P19.T7 (MSMg01no365_p19.b1)MSMg01-365P19.TJ (MSMg01no365_p19.g1)
ACCAG473811AG473812
length7551,764
length of high quality
(start - end)
450 (35 - 484)---
definitionCHROMAT_FILE: MSMg01no365_p19.b1 PHD_FILE: MSMg01no365_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:40 2005CHROMAT_FILE: MSMg01no365_p19.g1 PHD_FILE: MSMg01no365_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACAGAG
ATTTCCTCCTGACTGTTTATGACCATTTCTACTAGAATTCGTTTGTGTTG
TTTCAAACCCTACTCTGGTCTAGGAAGTTAATGGCAAGGAACAAATGTAA
GTGTTTTGTCTAATCATTTAGTTCTTGGTTCAGATCTACTATACCCTGCA
GGTGACAATCACACTCTAAATTTACAGTTAAAGTCCTTTCCCTTTAACAA
ATCTAAGCTACCATCATTAGAGCCCAAGGGTTCTTAACTAGAGACCTCCC
TGAATCATTTTCCTTTCCTCAATATTCAAGATTCATTCTTCAGTGGTAAG
AAAACAGCATGGGAGGGCTGGAGAGATGGATCAGTGGTTAAGAGCACTGA
CTGCTTTTCCAGAGGTTGCTGACAGGAGCCTGAAATAGCTGTCTTCTTAG
AAGCTCTGCCAGAGCCTGACAAATACAGAAATAGATGCTCACAGCCAACT
ATTGGACTGAGCACCAGATCCCCAATGGAGGAGTTACAGAAAAGACTGAA
GGAACTGATAGGTTTTGTAACCTCATAGGAAGAACATCAATATGAACCAA
CCAGACTCCACCCCCCAATTTTTCCAGGGACTAAACCTCCATTCTAAGAG
CACTCTTGCACGCACCCATGGCTTTCGTCATATATGTATTTAGGATGTCC
TTGTTTTTCTTCCTTGTCATTTATCGGCCCCCCGTTTTCTGTCACTTTTC
TTTTT
GTATTGTGTACCCCCCTCTTCTTTNNCNTANGCCCCTTTGTCCACATTAC
CTTCGCTTGGTAGAGTACATATTTTGCTAATCCCTCCTAATTCATCCTTG
AATTAGTATTTAGGATAGACAACCATGCGGTGACTACTCCTCTACTCTTA
GCGAAGCAGGGCACTACTTCTCATACATCCGCCCCGCCGACATTCTCTCT
CCACCATAACTCTATCTACATCAGTATTTGGCGCTGCCTAGGGAATCGAC
TCGAGTGGTGAGCGCATGTTTTGCATTGGTTTTTTATTGGTTATTTAGAT
CTCTCCCGCCACGCCGATATCTACCACATATTAACATGTGTTCCTATATT
ATAACAGTATATATTTGCAATGTAGTGTGCGGCATTTAATAAATAACTAG
TACTNACTGGAGTGTGTCTGCTGTAGTAGTGATACGCGAGTACTGTGTCG
GTGTGTATGTGTAGAGCCAACGTGATTCCGGCAACTGTGTGTACGATCTT
AGACTTGCGTCGGCATGGCGCGCGCATGAGGCCTATCTGCTCTCACTATC
ATATCTATATGTATACTTATATTGTCATTATACTTTGTGTTTAATCGATT
CGTATTATCGTAAGATTACTCGTCCACAGACAATATTTCTCTATATTATA
CCATCGTCTTCGATATACAATACTGACAGATACTCATCTTGCCTCAATTA
TGTCTCCGGCATCCTAAGCTATATACATGATTCTCTACACGTCATACATG
TATTGTTGCTATCTATGTGAGATCATAATGTTTCTTGCAGCTTGATACGT
GACTCTACTGTGATGCTGTNATATCTCCTTGTGTGCTCCTAATTATTGTA
TCCTCCATCCTTGCGTACGTGTTTCATTCGTGCCACACATGTGTCTGTGC
TCACTATCTCTTCACTATGATTCGATAGCCGACACTGTATAAATGCNTGA
TGTGCGCCTCTGCCTGCGTTATGACGATTCATGCTCGTANACTACTACAT
TGCATCCGTCGATATGAGCGNATCTGNCTGCTTGATTCATCACNCAGTGA
TGTAATCTGTAGATGCTACGCCGAGANCACTCTCTTCGCCTGCTCTCATG
ACACGTGTCTCTTGTATATCTCATCTGATATAGTGTAGAATACGTGTAGC
ACTTCTAGTAGATTACTCTCTCATTACGTTCGATATATGATCGTCATCAT
CTATGCTCTACTCCANTCATATCACATCNACTCATCCTCGGCAAGGCTAA
CACAGGANCGATAGGTGTACTATGTCTCACATATCGATCACTCTATGCGN
TTACTTGTATATAGTACTTTGGTGTAATGTCACTGCCCGCCGACNTAGTN
TATAGTGACNCTATGCNCTACTACCCGCTGCATCATGTTATNATATGTCA
TAATTATAGTGATAGTGACAGTATGNACGTATGCATACTGATTTGATATG
ATGATATATANTGTACCCGGACTCGNCTAAGTATGATGCGTCACTGACCA
GCGTGACATATCATAAANCTCCACTCGCGATNGATATGTGTATCGCTAGC
ANTATGCTCGATCTCCCTGTCTCGTCNCGACTGACACTTACTATATCGAA
TCCTTCACGCGCGANCTGAATTATATTAGTNTATCGTCGACAGCATAAAA
TGATTCACGAGAGTTCATTTATACTACACTTGTATCATTATTGCTATCTT
GTCTCTCGTGAACAGTCTCACTTGTCACACTGACTGTGTCGTTGAGTGCG
ACTGTAGTACAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_p19.b1 MSMg01no365_p19.b1 CHROMAT_FILE:
MSMg01no365_p19.b1 PHD_FILE: MSMg01no365_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:40 2005
         (450 letters)



>mm_chr5_63718919_63719768
          Length = 850

 Score =  862 bits (446), Expect = 0.0
 Identities = 446/446 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacagagatttcctcctgactgtttatgaccatttctactagaattcgtttgtgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacagagatttcctcctgactgtttatgaccatttctactagaattcgtttgtgt 264

                                                                       
Query: 65  tgtttcaaaccctactctggtctaggaagttaatggcaaggaacaaatgtaagtgttttg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtttcaaaccctactctggtctaggaagttaatggcaaggaacaaatgtaagtgttttg 324

                                                                       
Query: 125 tctaatcatttagttcttggttcagatctactataccctgcaggtgacaatcacactcta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctaatcatttagttcttggttcagatctactataccctgcaggtgacaatcacactcta 384

                                                                       
Query: 185 aatttacagttaaagtcctttccctttaacaaatctaagctaccatcattagagcccaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatttacagttaaagtcctttccctttaacaaatctaagctaccatcattagagcccaag 444

                                                                       
Query: 245 ggttcttaactagagacctccctgaatcattttcctttcctcaatattcaagattcattc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggttcttaactagagacctccctgaatcattttcctttcctcaatattcaagattcattc 504

                                                                       
Query: 305 ttcagtggtaagaaaacagcatgggagggctggagagatggatcagtggttaagagcact 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttcagtggtaagaaaacagcatgggagggctggagagatggatcagtggttaagagcact 564

                                                                       
Query: 365 gactgcttttccagaggttgctgacaggagcctgaaatagctgtcttcttagaagctctg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gactgcttttccagaggttgctgacaggagcctgaaatagctgtcttcttagaagctctg 624

                                     
Query: 425 ccagagcctgacaaatacagaaatag 450
           ||||||||||||||||||||||||||
Sbjct: 625 ccagagcctgacaaatacagaaatag 650


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)