NGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCG
CGGAATTCTTGAATACTGCGGTACTAGGCTCTGCATGCTAGTTTAGAAAT
AGAAGTGTATAGTTTGGTATAGTGGCGCATACCTTTAATCCCAGCAGCTA
GGAGGCAGAGGCAGGCAGATCTCTGAATTGAGGCCAGCATGGTCGACAGA
GTAAGTTCTAGGACAGCCAGGGCTACACAGAGAAACCCTGTGAACAAACT
GAAGGAAATAGAACGTCTTGAGGTGGGAGAGAGGCCCTGGACCTGCTGTG
TGCCTGTGTGTCTCCTGAGACGAAGACTTTATGGACAAATGTGTACGACA
CAGCCCAGGCTTCCAGATTAAATACCAGGGAGAAAGAACATCACCTGTCT
ACAGACTTCAGACAGACACCACCTCACATTATACATCATTTGGAAGAAGA
CATAGCTCTCAAGCAAGAACTGTTCACCCATGAAATGAAGTAAGCCTTCA
GGGAAAGGAAGATGAATTAGCTCATAAACATTCTATGTTTTAACTGCCCC
GGGAAAAATAAAATAGAGGAGGCGCGGTAGGAACCTTCTTGGGTAACCTC
CTGTCTCTAGCCCACTACACCCAGCACCATCATGCANAGGAGCAGAGTGT
TGAGGGTGGACAGCACTGTGGGAAGGTCAGAATTTTACTATTATCTCACC
CCACTACATGTTGGCTCTAGGGTTCCTTGGCTACCCAGGGGTACAGAAG

NNCCCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCCAGGCATTCTTAGCATTTTTGCCCCACATCA
GCACAACAAGAATTTGTAGGGGTTTTGCGGGGGGGGGGAGGAACATTANT
GTATTTGNNNNNNNNNTTTTTTCTTTTTGTTGTTTTTGTGTTGTTTNNTT
TTCTTTTCTTTTCCTCCTTTCCCCTTTTCTTCTCTCCCCCCCTTTTCCCC
CCTTCCCTCTTTTTTTTTCCCTCCCTCTCCCCTCTCCCTTTCCTCCCTCT
TTCCTCCCCCTTTTCCCCCCCCCCTTTTTTTTTTTGCCGCCCGCCCCCCG
GCGCCCCCCCCCGCTCCTCCCTCCCCCCTTCTCCTCTCTTTCTCCCTTTC
CTTCTCCTCTTCCTTTTTCCCCCCCCCCCTTCTTTTCCCCTCTNTTTTTT
TCCTCCTTCTCCTCCTCCCCCTCTTTCCCTTCTCCTCTTTTCCCCTTTTT
TTCCCCCCTTTTCCTTCCTCTCTCTTTCTCCTTCCCTTTCCCCTTCTCCT
TTCCTCTTTCCCTCCCTTCCTTTCTCCCCTTTCTCCCTTCCCTCCCCCCT
TCCCCCCCTCTTCCTCTCTCTTCCTCTCTTCTCTCCCCATACATTTCTTT
CCCTCCCTTCTTTTTTTTCTCCTTTCCCTTTCTCCTCCCCGCCCCTCTCT
CCTTCTCTTTTTCCTCCCCCTCTCTCCCCTTTCTCTCTTCTCTTTCTCTA
CTTTCTCTTCCCTCTTTCCTCATCTCCTTCTCCTTCCCCTCTTCTCTTCT
CTCTTTTTTCCG

Query= MSMg01no366_j04.b1 MSMg01no366_j04.b1 CHROMAT_FILE:
MSMg01no366_j04.b1 PHD_FILE: MSMg01no366_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:27 2005
         (590 letters)



>mm_chr5_66740475_66741464
          Length = 990

 Score = 1050 bits (543), Expect = 0.0
 Identities = 575/589 (97%), Gaps = 6/589 (1%)
 Strand = Plus / Plus

                                                                       
Query: 8   ggaattcttgaatactgcggtactaggctctgcatgctagtttagaaatagaagtgtata 67
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattcttgaataatgaggtactaggctctgcatgctagtttagaaatagaagtgtata 261

                                                                       
Query: 68  gtttggtatagtggcgcatacctttaatcccagcagctaggaggcagaggcag------g 121
           ||||||||| ||||||||  |||||||||||||||||||||||||||||||||      |
Sbjct: 262 gtttggtatggtggcgcacgcctttaatcccagcagctaggaggcagaggcagaggcagg 321

                                                                       
Query: 122 cagatctctgaattgaggccagcatggtcgacagagtaagttctaggacagccagggcta 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cagatctctgaattgaggccagcatggtcgacagagtaagttctaggacagccagggcta 381

                                                                       
Query: 182 cacagagaaaccctgtgaacaaactgaaggaaatagaacgtcttgaggtgggagagaggc 241
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 382 cacagagaaaccctgtgaacaaactgaaggaaatagaacatcttgaggtgggagagaggc 441

                                                                       
Query: 242 cctggacctgctgtgtgcctgtgtgtctcctgagacgaagactttatggacaaatgtgta 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cctggacctgctgtgtgcctgtgtgtctcctgagacgaagactttatggacaaatgtgta 501

                                                                       
Query: 302 cgacacagcccaggcttccagattaaataccagggagaaagaacatcacctgtctacaga 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cgacacagcccaggcttccagattaaataccagggagaaagaacatcacctgtctacaga 561

                                                                       
Query: 362 cttcagacagacaccacctcacattatacatcatttggaagaagacatagctctcaagca 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 562 cttcagacagacaccacctcacattatacatcatttggaagaagacatagctcccaagca 621

                                                                       
Query: 422 agaactgttcacccatgaaatgaagtaagccttcagggaaaggaagatgaattagctcat 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 agaactgttcacccatgaaatgaagtaagccttcagggaaaggaagatgaattagctcat 681

                                                                       
Query: 482 aaacattctatgttttaactgccccgggaaaaataaaatagaggaggcgcggtaggaacc 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aaacattctatgttttaactgccccgggaaaaataaaatagaggaggcgcggtaggaacc 741

                                                            
Query: 542 ttcttgggtaacctcctgtctctagcccactacacccagcaccatcatg 590
           ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 742 ttcttgggtaacctcctgtatctagcccactacacccagcaccatcatg 790


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)