BAC Information

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BAC

Clone NameMSMg01-366N11
Chromosome5 (Build37)
Map Location 6,835,632 - 6,835,802
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041208, EG435830
Downstream geneLOC100042651, 4921511H03Rik, LOC242823
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366N11.T7 (MSMg01no366_n11.b1)MSMg01-366N11.TJ (MSMg01no366_n11.g1)
ACCAG474458AG474459
length765752
length of high quality
(start - end)
244 (76 - 319)171 (78 - 248)
definitionCHROMAT_FILE: MSMg01no366_n11.b1 PHD_FILE: MSMg01no366_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:48 2005CHROMAT_FILE: MSMg01no366_n11.g1 PHD_FILE: MSMg01no366_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAGATCCG
CGGAATTCACTCTTTCACCTGTGCACAATGCTTGTTTACTAGTTAGGCAC
AGTGGGAGCCAGTGCCATCTTGTAATGGTGATTACTTACAGCTCTCCACA
TTATTCAAACCAATGAATTTATGAAATTCTTAGGCAACGGGTGGTTTGGA
TGATATCATCCTGAGTGAGGTAATCCAATCCCAAAATAACAGAGGATATG
GACTCACTTATAAGTGGATATTAGCCCAGAAACTTAGAATACCCAAGATA
TAATTTGTAAAACACATGAAATTCTTTGAAGAAGGAAGACCAAGGTGTGG
ATACTTTGTTCCTTCTTGGAATGGGGAACAAAATACCCATGGAAGGAGTT
ACAGAGACAAAGTTCAGAGCAGAGCCTGATGGACCAAACATCCAGAGACT
GCCCCACTTGGGGATCCACCCCATAAACAGCCACCAAACTCAGTCTCTCG
GCAGATGCCAACAGGAGCCAACTGACAGAAGCCTGATATAGCTGTCTCCT
GTGACTCTCTGCCAGTGCTTTGGAAATACAGAATGGGATGCTTCAAGTCT
TACATTGGTATGGAGTGCAAGGTCTTCCACGAATGAGCCCGAAAAATACC
CCGGCATTTGATAGGTTCTGAACCTCTAATCGATGAACCTTCCTTTTAAA
ATTCTATTTCCCCCCCCATCTCCTCGGTACCCCCCTCCCCTTTCCTTACT
AAACACCTTCCGTGA
TTCCGATGATANTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTCTATTTTGAATCGGGCTCA
TTTTCTTGGGTAATTATGGCATACTACTTGTTTTGGTGTGTCTGTGTTGA
TTAATTGGAAGGATTGTTGGAGAGAATAACACTGGGAGTTTAGTAGCTTT
TCCTAATTACCTTTCATAGTAAGCAGAGGAGCTCTAGAGATTCTTGACAT
TTTTGAAAATACATTGTTCATTGTTGACTAACCAGGCAACAGAAGGAAAA
AGCCAACCCAAGCAAGCTAGCATGCATTGCAAACAGCAATACACTATTGG
ATAGAGTGGGGTCACTTGCTGTGTTGATTTACATTGCAGAAGATGTACTT
TGCTCTCAGTACTGACCACCCGGTTCTTATCCCTGATTGATTTGTGTTTC
TAACTCTCTCATTATTTTTGTAGTCTGGTAGTTCCTGTAGGTTAGAGGAA
TGTCCTGAGCTGGACAGCACAGGTCCAAGTTCTGGTCTCTCCATTTGTTT
GTCAGGCGACTTTTCATGACTTGATTATATTCTCTTTCTCAAGCACTTAT
GGTGTTTTAGCCATTGGTCTCCATATTCTCTGAGTTTATGGGTACTCTTT
CTTTTTTTTTTTTTCCATTGACGGCTTTCGTTTTGCATTTTTTTCCCCAC
TGGGTTTTTACTATTTTTACGTTTTTTTTCTTATCCTCTTTTTTTTTTTT
TC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_n11.g1 MSMg01no366_n11.g1 CHROMAT_FILE:
MSMg01no366_n11.g1 PHD_FILE: MSMg01no366_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:48 2005
         (171 letters)



>mm_chr5_6835432_6836002
          Length = 571

 Score =  323 bits (167), Expect = 4e-93
 Identities = 170/171 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctctattttgaatcgggctcattttcttgggtaattatggcatactacttgttttggt 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 371 tcctctattttgaatcgggctcattttcttgggtaattatggcataatacttgttttggt 312

                                                                       
Query: 61  gtgtctgtgttgattaattggaaggattgttggagagaataacactgggagtttagtagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gtgtctgtgttgattaattggaaggattgttggagagaataacactgggagtttagtagc 252

                                                              
Query: 121 ttttcctaattacctttcatagtaagcagaggagctctagagattcttgac 171
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ttttcctaattacctttcatagtaagcagaggagctctagagattcttgac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 171
Length of database: 571
Length adjustment: 8
Effective length of query: 163
Effective length of database: 563
Effective search space:    91769
Effective search space used:    91769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)