BAC Information

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BAC

Clone NameMSMg01-367F15
Chromosome5 (Build37)
Map Location 43,594,798 - 43,595,146
singlet/doubletsinglet
Overlap genenone
Upstream geneEG636612, LOC433883, EG665934
Downstream geneCpeb2, C1qtnf7, 4833430A08Rik, 5730509K17Rik, Fbxl5, Bst1, Cd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1, Prom1, LOC100041413, Tapt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367F15.T7 (MSMg01no367_f15.b1)MSMg01-367F15.TJ (MSMg01no367_f15.g1)
ACCAG474845AG474846
length783767
length of high quality
(start - end)		474 (71 - 544)481 (57 - 537)
definitionCHROMAT_FILE: MSMg01no367_f15.b1 PHD_FILE: MSMg01no367_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:29 2005CHROMAT_FILE: MSMg01no367_f15.g1 PHD_FILE: MSMg01no367_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAGGACTGCCACGACAACTAAGGCTACACAAAGAAACCCAGTC
TTGGGAAAAAAAAAGTTTGGGGAATGAAAATCAAATGTGTGAAACTATCA
ATAAAAATGTTTTTAAATTGTTATGGGAAAGCAGTTTCTAAAATTTATAG
ACTTAAGACTAATAAGTGTACACACACACACATACACACACACACTTTGG
GATGATTTGGATTATGTTGGCCTGGTTCAAAAGGTTTCAGAGGGGAATAT
TAGCAAGTAGCTCAGAGACATTCTTGTGATATTTTGGCAACGAACATGAA
TGCCTTTTGCTCCTGCCCTAAAAATCTCCCTGAATCTAAATTGAAGAGTC
TTGGATTTAATGTTATTGGCAGAGGAGATTTCAAGACAGCCTAAGGTGGT
AACTTTTTAAGGTGGTGGTTATACTGATCAGTTTTATGCAGATCTACAAT
GAAAAGGAGCAACTATCTCAAGAAGAAATATGAAATGCACAATTGAGGAG
AAAGTGAGCACTAGGAAGTGGTCTGTTGGAGCCAAGTCCCGTCAGTGATA
AGGAAAGTCTAATTCCAAATGCTACAAAGGGAATGGTGATTGCCCTCCCC
TTCCTCCGAACTCCATAATTTGTTTTTTTTTCCCCAATTCCGTTTTTACT
ACATTTTCTTTACTCCCTTCCTCTTTTCTCTTAACGAACTTCAGCTATTT
TTTTTTTTTCCTTACACCATTTACTTTTCAACT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTTGTTTAGCTCTGAACTCCATTTTTTAATGGGTTTGTTTGAAT
TTCTGGAGTCTAGCTTCTTGAGCTCTTTGTATATATTGGATATTAGTCCC
CTATCAAATTTAGGATTGGTAAAGATCCTCTCCCAATCTTTTGGTGGCCT
TTTTGTCTTATTGACAGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTAA
TGAGGTCCCTTTTGTCAATTCTTGATCTTACAACACAAGCCATTGTTGTT
CTTTTTAGGAATTTTTCCTTTGTGCCTATATCTTCAAGGCTTTTCCCTAC
TTTCTCCTCTATTAATTTCAGTGTCTCTGGTCTTATGTGAAGGTCTTTGA
TCCACTTAGACTTGAGCTTTGTAAAAGGAGATAACAATGGATCAGTTCAC
ATTCTTCTACATGATAACCTCCAGTTGTGCCCCCGAACCATTTGTTGAAA
ATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGTTCAA
GTGACCATAGNTTGTGTGGATTCATTTCTGGGGCCTTCAATTCTATTCCA
TTGATCTACCTGTCCTGGCACTGCCCCAGAACATGCAGGGTTTTAATCCC
ACTTTGTTTTGTATATAGCTTAAATGTCACGCTGGGGGTTTCCCCCCGAA
GTTCTTTTATTGTTGGGAAAAAATTTTTTTTTATCCAAGGCTTTTTTTTT
TTTCCCAAAAAGGTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_f15.b1 MSMg01no367_f15.b1 CHROMAT_FILE:
MSMg01no367_f15.b1 PHD_FILE: MSMg01no367_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:29 2005
         (474 letters)



>mm_chr5_43594798_43595671
          Length = 874

 Score =  629 bits (325), Expect = 0.0
 Identities = 344/351 (98%), Gaps = 2/351 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaactaaggctacacaaagaaacccagtcttgggaaaaaaaaagtttggggaatgaaaa 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 349 acaactaaggctacacaaagaaacccagtcttggaaaaaaaaaagtttggggaatgaaaa 290

                                                                       
Query: 61  tcaaatgtgtgaaactatcaataaaaatgtttttaaattgttatgggaaagcagtttcta 120
           | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 289 ttaaatgtgtgaaactatcaataaaaatgttttaaaattgttatgggaaagcagtttcta 230

                                                                       
Query: 121 aaatttatagacttaagactaataagtgtacacacacacacatacacacacacactttgg 180
           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 229 aaatttatagacttaagactaataagtgtacacacacacacat--acacacacactttgg 172

                                                                       
Query: 181 gatgatttggattatgttggcctggttcaaaaggtttcagaggggaatattagcaagtag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 gatgatttggattatgttggcctggttcaaaaggtttcagaggggaatattagcaagtag 112

                                                                       
Query: 241 ctcagagacattcttgtgatattttggcaacgaacatgaatgccttttgctcctgcccta 300
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 111 ctcagagacattcttgtgatattttggcaatgaacatgaatgccttttgctcctgcccta 52

                                                              
Query: 301 aaaatctccctgaatctaaattgaagagtcttggatttaatgttattggca 351
           ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 51  aaaatctccctgaatctaaattgaagagttttggatttaatgttattggca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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