BAC Information

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BAC

Clone NameMSMg01-367I06
Chromosome5 (Build37)
Map Location 125,426,000 - 125,426,191
singlet/doubletsinglet
Overlap genenone
Upstream geneHip1r, Vps37b, Abcb9, Ogfod2, Arl6ip4, Pitpnm2, Mphosph9, 2810006K23Rik, Cdk2ap1, Sbno1, Setd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik, Rpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3, 4432405B04Rik, Atp6v0a2, Atp6v0a2, Dnahc10, Ccdc92, Zfp664
Downstream gene3110032G18Rik, Ncor2, Scarb1, Ubc, Dhx37, Bri3bp, Aacs, Tmem132b, EG231736
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367I06.T7 (MSMg01no367_i06.b1)MSMg01-367I06.TJ (MSMg01no367_i06.g1)
ACCAG474965AG474966
length792733
length of high quality
(start - end)
364 (51 - 414)193 (307 - 499)
definitionCHROMAT_FILE: MSMg01no367_i06.b1 PHD_FILE: MSMg01no367_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:42 2005CHROMAT_FILE: MSMg01no367_i06.g1 PHD_FILE: MSMg01no367_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTTTTTTTTTTTTAAAGATTTATTTATTTATTTATTTAT
TTATTTATTTATTTATTTATTTATTTATTTATTTAATGTATATGAGTACA
CTGTAGCTGTACAGGTGGTTGTGAGCCATCATGTGGTTGTTGGGAATTGA
ATTTAGGACCTCTGCTTGCTCCGGTTGGCCCCACTGGCTCCAGTCCTGCT
TGCTATGGCCCAAAGATTTTATTATGTAGTTGACTTCAGATGCACCAGGA
TAGGGTGTCAGATCTCCTTATGTATGGTCATGAGCCACCATGTAGTTGCT
GGGATTTGAACCCAGGGCCTTTGTGGAGCACGAGCCCCCACCACAGTCCC
AGCTGATGCCACTCACTTTTCTCCTGGAGGTGAGAATGAACCTGCGGCAT
TGAGTCCAGCTCCCTGAGGACAGCCCGTGTTCCACGGTTTCTGCCACAAA
GTTCTGAGTCACAGCTGTCGTATGTTACTGGCCTCTTTCTCTGCCGTATT
AATAGATCTTCCCCCTTTTCTTTTTTCCTGCCTTCTTTATCCCCTGCTTG
TCCCTTCTTTCACCTGCTCTTCGCACCCTCTTTTCCTTCTTTCATTCCTT
TTCCCCACTTTCACGCTGTTAATCGCTATCTTCTAGTAATCTATTATTTT
CCTGCACGTTTCTAATATCGCCCCCTTTCCTTAATCCCTCGCTACGCATC
CTCCTTTTCTTTCGTTACTCCGAATTACCTATCCCCTTTCTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACTAGCG
GAATTCTCCTCATATCCCTATTAACCAGAGTTGGAGTCACGTACCTCTGC
CTACGCTGGGAAAAACCTAAGGGTGGGCCATATGTTCGCATGAAGCAGTT
GTATTTTACCCATGTCTAAGAGGTACTGGGTTGAAGAGGGTTTTCTGCTC
CCAGAAAAGACTGGTTCCGAGTAAGGTAGACCAAGATTGGTCTGATTCAG
ACGTGAGACTGGGGGTAGTGAGCCAGAGACAAGGAACCTAAGAGGATGTT
TTTTTGAGATTGAAACTCTGCTCTGTAGAAAGGGACAGTGGCACGTCTGT
GACGTGGGGTCCCCAACCCCCCCCCGCACTGTGTTATAGAGTCATTCAGC
CCCTTCCTGAGTTACCTAGAACCTCTTTAGCAAAATGTGCACAAAATGTG
CCCAAAGAGGACCCCATGCTCTGACCCCGATGCCAGGCCTGCGGTGGACG
ATCAGTTGGATTATGTCAGTGCTTACGGTGTACCTGACTGGTGCCTGGCT
TTGTATCTAGTCTCCTCGTCTTTTGTCCTTCCTTATGGATCTAGCTTGTC
TCTAGGGTGCTTTTTTTGAATGTAATCAAATCCATTTTTTGCTTGTTATG
TTCGTCTTTTATCTTTTGTGTTTTTTTTTCTCTTACTTTTGGGAACTTTT
ACTCTTTTTTTTTTTCTTCCTACTTTTTTTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_i06.g1 MSMg01no367_i06.g1 CHROMAT_FILE:
MSMg01no367_i06.g1 PHD_FILE: MSMg01no367_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:42 2005
         (193 letters)



>mm_chr5_125425800_125426391
          Length = 592

 Score =  313 bits (162), Expect = 3e-90
 Identities = 186/194 (95%), Gaps = 3/194 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agattgaaactctgctctgtagaaagggacagtggcacgtctgtgacgtgggg-tcccca 59
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||
Sbjct: 392 agattgaaactctgctctgtagaaagggacagtggcacgtctgtgacatggggct-ccca 334

                                                                       
Query: 60  acccccccccgcactgtgttatagagtcattcagccccttcctgagttacctagaacctc 119
           |||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 333 accccccctc-cactgtgttattgagtcattcagccccttcctgagttacctagaacctc 275

                                                                       
Query: 120 tttagcaaaatgtgcacaaaatgtgcccaaagaggaccccatgctctgaccccgatgcca 179
           ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 274 tttagcaaaatgtgcacaaaatgtgcccagagaggcccccatgctctgaccccgatgcca 215

                         
Query: 180 ggcctgcggtggac 193
           ||||||||||||||
Sbjct: 214 ggcctgcggtggac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 592
Length adjustment: 8
Effective length of query: 185
Effective length of database: 584
Effective search space:   108040
Effective search space used:   108040
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)