Query= MSMg01no367_k22.b1 MSMg01no367_k22.b1 CHROMAT_FILE:
MSMg01no367_k22.b1 PHD_FILE: MSMg01no367_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:55 2005
(457 letters)
>mm_chr5_114619375_114620230
Length = 856
Score = 650 bits (336), Expect = 0.0
Identities = 354/366 (96%), Gaps = 11/366 (3%)
Strand = Plus / Minus
Query: 92 cgatggcattaatggctttataagaagaggaagaaaggcctgagttatcactctggcttg 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 cgatggcattaatggctttataagaagaggaagaaaggcctgagttatcactctggcttg 797
Query: 152 tcttcccttggagcgcctctgccgtattaggattctgtgtgaggatgggtcacaggtctg 211
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 tcttcccttggggcgcctctgccgtattaggattctgtgtgaggatgggtcacaggtctg 737
Query: 212 ctctgctcttggactgcccagaatcaagtgaacctcctctattctttccatttactcagc 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ctctgctcttggactgcccagaatcaagtgaacctcctctattctttccatttactcagc 677
Query: 272 ctcaggtattttgttatagtaaaaaagaaaaaaaaaaacaaaaaaacagactgagacagc 331
|||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 676 ctcaggtattttgttatagtaaaaaa---aaaaaaaaaca--------gactgagacagc 628
Query: 332 aactgaacaggaaaaatgagaagaaaggaggtctcctggattctgctgacgcaggcttgt 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 aactgaacaggaaaaatgagaagaaaggaggtctcctggattctgctgacgcaggcttgt 568
Query: 392 tcacacacctgtcttctatgggcaagtttcacaccctccctgctccagcttgccacaagt 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tcacacacctgtcttctatgggcaagtttcacaccctccctgctccagcttgccacaagt 508
Query: 452 gtctgg 457
||||||
Sbjct: 507 gtctgg 502
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 856
Length adjustment: 10
Effective length of query: 447
Effective length of database: 846
Effective search space: 378162
Effective search space used: 378162
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_k22.g1 MSMg01no367_k22.g1 CHROMAT_FILE:
MSMg01no367_k22.g1 PHD_FILE: MSMg01no367_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:55 2005
(409 letters)
>mm_chr5_114440096_114440899
Length = 804
Score = 760 bits (393), Expect = 0.0
Identities = 403/409 (98%), Gaps = 5/409 (1%)
Strand = Plus / Plus
Query: 1 taaatatcttaaccccatcactacttactcccctccccacctctcctttctgggcaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaatatcttaaccccatcactacttactcccctccccacctctcctttctgggcaaaaa 260
Query: 61 cacaaaatgagaagaaaacacaaggtggtccaggaggagttggcgtgttttttttttttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacaaaatgagaagaaaacacaaggtggtccaggaggagttggcgtgttttttttttt-- 318
Query: 121 tttaaagcacccactgtgtggaagagaacatcagagcagtgtgacagccaggacagacac 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ---aaagcacccactgtgtggaagagaacatcagagcagtgtgacagccaggacagacac 375
Query: 181 aagactgactggggaccagccagccagccagaggtcaagggcagcaggaactggatccag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 aagactgactggggaccagccagccagccagaggtcaagggcagcaggaactggatccag 435
Query: 241 agctaaggtaggaagggaactgggcagtatgggatatacatcaagaggagaccatttcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 agctaaggtaggaagggaactgggcagtatgggatatacatcaagaggagaccatttcca 495
Query: 301 ccaagaatgagtattccataaggtgtcccccttatatgaagagtctatgtacaactttat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ccaagaatgagtattccataaggtgtcccccttatatgaagagtctatgtacaactttat 555
Query: 361 agatgtacacattgggaatggaccgcgttggctcctgggctgtaaagga 409
||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 556 agatgtacacactgggaatggaccgcgttggctcctgggctgtaaagga 604
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 804
Length adjustment: 9
Effective length of query: 400
Effective length of database: 795
Effective search space: 318000
Effective search space used: 318000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
