NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCACCTGATGAATACCGAATGGCAGAGAAGCACCTGAAAAAA
TGTTCAACATCCTTAATCATCCGGGAAATGCAAATCAAAACAACCCTAAG
ATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTGAGGTGACA
GCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGG
TGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCT
CAGAAAATTGGACATAGTACTACTGGAGGATCCAGCAATACTTCTCCTGG
GTATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACT
ATGTTCATAGCAGCATTATTTATAATAGCCAGAAGCTGGAAAGAATCCAG
ATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAA
TGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCC
AAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACA
AAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAA
CCTAGGATACCCAAGATATAATATACATTTTCCTAAACACATGAAACTCA
AGAAAAATGAATACTGAAGTGTGCACACTATGTCCCTCCTTATAAGTGGT
ATCAAAACACCCT

CAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTATTTGCCATTCATTAGGGTCACGGGA
GAGCATGCAGGCTATTGTGGTGGGTGAAGCCAGTAGCAGGAAAGAGGGCC
AAATGGGCTCTTTGTCATCAACTCCTGAATGGATTTTTTAAGAAGTCTTT
TTATTAGAGTGGTCACATTACAGGTAGTGATTTTTCAAGTCTAGGAATGT
AATGGAGGAAGAGACAAATTTCCAAATGTCTGTAGCATTTCTCAGGTAGA
TTAGTCCTTAAATATTATGAAGAGGAGACTGAGGTTTTGGGAAGGTAACT
TACAAATACCATGAGTGATAAATTTGAATTTGAATTCAAATACAGGCTGA
TTATTTCTTTTCACCATAGTGCACTTGGAGTGATTTGTGGGAGAGGATTT
TCAGCAGAGGGCAAACTACATCCCTGTCTGTGGTTAAACAAGCTGGGAGG
GATCATAAATCAGAGGTGGCACTGGAAGGAAATGAGTCTTGGAAAGAAGA
TTGATGTAGATGGCTTTAATGATACCTCCCATTTATGCGATTCAAGGGAG
GAAGGCAGCCCATGTGGGAGAATCAACATGGCCAGTGCCATATGTGTGGG
ATGACACCAAGGGAGGCCCCCAGGGGCACAGATGCATAGTATCTTACGTG
ATTGATGGCTCCCAGAAAAAAGTTGAGAAATTCCCAGTTTAAACATGAAC
GGAGG

Query= MSMg01no367_n15.g1 MSMg01no367_n15.g1 CHROMAT_FILE:
MSMg01no367_n15.g1 PHD_FILE: MSMg01no367_n15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:08 2005
         (598 letters)



>mm_chr5_4239592_4240589
          Length = 998

 Score = 1102 bits (570), Expect = 0.0
 Identities = 585/590 (99%)
 Strand = Plus / Plus

                                                                       
Query: 9   cattcattagggtcacgggagagcatgcaggctattgtggtgggtgaagccagtagcagg 68
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 209 cattcattagggtcacgggagagcatgcaggctattgtggtgggtgaagtcagtagcagg 268

                                                                       
Query: 69  aaagagggccaaatgggctctttgtcatcaactcctgaatggattttttaagaagtcttt 128
           |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 269 aaagagggccaaatgggctcttggtcatcaactcctgagtggattttttaagaagtcttt 328

                                                                       
Query: 129 ttattagagtggtcacattacaggtagtgatttttcaagtctaggaatgtaatggaggaa 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ttattagagtggtcacattacaggtagtgatttttcaagtctaggaatgtaatggaggaa 388

                                                                       
Query: 189 gagacaaatttccaaatgtctgtagcatttctcaggtagattagtccttaaatattatga 248
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 389 gagacaaatttccaaatgtctgtagcatttctgaggtagattagtccttaaatattatga 448

                                                                       
Query: 249 agaggagactgaggttttgggaaggtaacttacaaataccatgagtgataaatttgaatt 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 agaggagactgaggttttgggaaggtaacttacaaataccatgagtgataaatttgaatt 508

                                                                       
Query: 309 tgaattcaaatacaggctgattatttcttttcaccatagtgcacttggagtgatttgtgg 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tgaattcaaatacaggctgattatttcttttcaccatagtgcacttggagtgatttgtgg 568

                                                                       
Query: 369 gagaggattttcagcagagggcaaactacatccctgtctgtggttaaacaagctgggagg 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gagaggattttcagcagagggcaaactacatccctgtctgtggttaaacaagctgggagg 628

                                                                       
Query: 429 gatcataaatcagaggtggcactggaaggaaatgagtcttggaaagaagattgatgtaga 488
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 629 gatcataaatcagaggtggcactggaagggaatgagtcttggaaagaagattgatgtaga 688

                                                                       
Query: 489 tggctttaatgatacctcccatttatgcgattcaagggaggaaggcagcccatgtgggag 548
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 tggctttaatgatacctcccatttatgcgattcaagggaggaaggcagcccatgtgggag 748

                                                             
Query: 549 aatcaacatggccagtgccatatgtgtgggatgacaccaagggaggcccc 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 aatcaacatggccagtgccatatgtgtgggatgacaccaagggaggcccc 798


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)