BAC Information

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BAC

Clone NameMSMg01-367O16
Chromosome5 (Build37)
Map Location 124,314,349 - 124,314,865
singlet/doubletsinglet
Overlap geneGpr109a
Upstream geneRnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a, Mlxip, LOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1, Zcchc8, Rsrc2, Kntc1, LOC100040005
Downstream geneGpr81, Denr, Ccdc62, Hip1r, Vps37b, Abcb9, Ogfod2, Arl6ip4, Pitpnm2, Mphosph9, 2810006K23Rik, Cdk2ap1, Sbno1, Setd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik, Rpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3, 4432405B04Rik, Atp6v0a2, Atp6v0a2, Dnahc10, Ccdc92
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367O16.T7 (MSMg01no367_o16.b1)MSMg01-367O16.TJ (MSMg01no367_o16.g1)
ACCAG475269AG475270
length758723
length of high quality
(start - end)
501 (51 - 551)517 (57 - 573)
definitionCHROMAT_FILE: MSMg01no367_o16.b1 PHD_FILE: MSMg01no367_o16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:13 2005CHROMAT_FILE: MSMg01no367_o16.g1 PHD_FILE: MSMg01no367_o16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACCTGTCTTCACCCTCAGTGCGAGAGGCACGGGGCCTGTG
TAGCCATGCCTGACTTTTTTGTATCTGAGCTTAGGTCTTCATGCTTGCAG
AGCAAGTGCTCTTACCACTGAGCCACCTCCCCGGCCTCTTGATTAGTTTG
TCGAGATAGAGTCTTATATAGCCTAAGCAGACACGGAGCCAACAAATAGT
TAAAAATACCTACACGTCTGATTCTCCTGTCTCTGTCCACCAAGTGCTGG
GACTACAGGCATGTCCCGTCACACCCTACTCAAAACAAACAAAAAGCAAT
TTTGGGGCTAAGGAGCCTCAGCGGGTCAAAGTGTTTGGCATACAAGCACA
ATGACCTGAGGTCAAACCACCAGAAACGATGTAAAAGCCGGATGTGTGTC
TGTGATCCCAGGGCTACTACAAAGAGATGCAGGCAAAGAGAAAATCCCTG
GACCTCACTGGAGCCTGGCATACATAGTGTAGAACAACTGAGACCCTCTT
CTCAAACAAGGTGGTGAGAAGACTAATGCCCAGGGCAATCCTCTGATCTG
GGGAGTGTATTGCCTGTACACATATGCACACCCTCTTGCTAGCGGACACC
CCCCTTACTCCCCCTTATTCACTCTTATTCTCCTTTCATTTTCAATTTTC
CACCATGGTGTCCCCTTGCCCCCTGCCCCTTATTCTCTCCCTAATTTCTA
TCCTCCTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTCTTGCCCCTGGCCATCATCTTGTTCTGCTCAGGCAGGATCAT
CTGGAGCCTGAGGCAGAGACAGATGGACAGACATGCCAAGATCAAGAGGG
CCATCAACTTCATCATGGTGGTGGCTATTGTATTCATCATTTGCTTCCTA
CCCAGTGTGGCTGTGCGCATCCGCATCTTCTGGCTTCTCTACAAATATAA
CGTACGCAACTGTGACATCTACTCCTCGGTGGACCTGGCTTTCTTTACCT
TCCTTAGCTTTACCTACATGAACAGCATGCTGGACCCTGTGGTCTACTAT
TTCTCCAGCCCATCTTTCCCCAACTTCTTCTCCACGTGTATCAACCGCTG
CCTTCGAAAGAATACATTGGGTGAACCCGATAATAACCGAAGCACTAGTG
TGGAGCTCACGGGGGACCCCAGCACAACCAGAAGTATTCCAGGGGCGCTA
ATGGCTGACCCCAGTGAGCCAGGCAGCCCCCCTTATCTGGCTTCCACATC
TCGTTAAGTTACTATGACAAGAAGGGAGATTGCCGCTCANGCCTGTGCTC
TCTGGAGAGGCGATTTGGTCGTTCGTTGAACAGGTTACATCTTCAGAATT
GGCTTACGCTTTCCTGGAACTTCCAAATCCGGAGAACCAATTTAAAAAAA
CTGCTTGTTGCTTGTATCAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_o16.g1 MSMg01no367_o16.g1 CHROMAT_FILE:
MSMg01no367_o16.g1 PHD_FILE: MSMg01no367_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:13 2005
         (517 letters)



>mm_chr5_124314149_124315065
          Length = 917

 Score =  977 bits (505), Expect = 0.0
 Identities = 514/517 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcttgcccctggccatcatcttgttctgctcaggcaggatcatctggagcctgaggcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 ttcttgcccctggccatcatcttgttctgctcaggcaggatcatctggagcctgaggcag 658

                                                                       
Query: 61  agacagatggacagacatgccaagatcaagagggccatcaacttcatcatggtggtggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 agacagatggacagacatgccaagatcaagagggccatcaacttcatcatggtggtggct 598

                                                                       
Query: 121 attgtattcatcatttgcttcctacccagtgtggctgtgcgcatccgcatcttctggctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 attgtattcatcatttgcttcctacccagtgtggctgtgcgcatccgcatcttctggctt 538

                                                                       
Query: 181 ctctacaaatataacgtacgcaactgtgacatctactcctcggtggacctggctttcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 ctctacaaatataacgtacgcaactgtgacatctactcctcggtggacctggctttcttt 478

                                                                       
Query: 241 accttccttagctttacctacatgaacagcatgctggaccctgtggtctactatttctcc 300
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 accacccttagctttacctacatgaacagcatgctggaccctgtggtctactatttctcc 418

                                                                       
Query: 301 agcccatctttccccaacttcttctccacgtgtatcaaccgctgccttcgaaagaataca 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 417 agcccatctttccccaacttcttctccacgtgtatcaaccgctgccttcgaaagaaaaca 358

                                                                       
Query: 361 ttgggtgaacccgataataaccgaagcactagtgtggagctcacgggggaccccagcaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ttgggtgaacccgataataaccgaagcactagtgtggagctcacgggggaccccagcaca 298

                                                                       
Query: 421 accagaagtattccaggggcgctaatggctgaccccagtgagccaggcagccccccttat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 accagaagtattccaggggcgctaatggctgaccccagtgagccaggcagccccccttat 238

                                                
Query: 481 ctggcttccacatctcgttaagttactatgacaagaa 517
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 ctggcttccacatctcgttaagttactatgacaagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)