Query= MSMg01no368_h16.b1 MSMg01no368_h16.b1 CHROMAT_FILE:
MSMg01no368_h16.b1 PHD_FILE: MSMg01no368_h16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:56 2005
(526 letters)
>mm_chr5_65202989_65203915
Length = 927
Score = 984 bits (509), Expect = 0.0
Identities = 518/521 (99%), Gaps = 1/521 (0%)
Strand = Plus / Minus
Query: 7 gaattccaccggatatttccgaatctgtgcctctcatcaattatttctgcattaacgtgt 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 gaattccaccggatatttccgaatctgtgcctctcatcaattatttctgcattaacgtgt 668
Query: 67 tttgtaaaagggagaggttcattgcttggcttcagatgggatgcaatgacccagggagcc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tttgtaaaagggagaggttcattgcttggcttcagatgggatgcaatgacccagggagcc 608
Query: 127 ggcgatccgccctcccctctccgtgaacaagccacccaattttacttttctgcctccacc 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ggcgatccgccctcccctctccgtgaacaagccacccaattttacttttctgcctccacc 548
Query: 187 catcggctccaccccatggagagttgccagggcgagtccaacttgtccaaacaggacata 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 catcggctccaccccatggagagttgccagggcgagtccaacttgtccaaacaggacata 488
Query: 247 gcttcagataagattctgcccacacccagtacttcggaaagaccaagtgaagcaattgat 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 gcttcagataagattctgcccacacccagtacttcggaaagaccaagtgaagcaattgat 428
Query: 307 tttacatgtaaataaggacaggtggaaaggcagggacggggcagactctctccagctttc 366
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 427 tttacatgtaaataaggacaggtggagaggcagggacggggcagactctctccagctttc 368
Query: 367 caacccccaccccc-aaaccctcccccgagagcgccggtagggctgcggagacccaaatg 425
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 caaccccccccccccaaaccctcccccgagagcgccggtagggctgcggagacccaaatg 308
Query: 426 tatattactctccaggccggctctgacgttcaagggcacctggttggtacttgggttaca 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tatattactctccaggccggctctgacgttcaagggcacctggttggtacttgggttaca 248
Query: 486 catttgtttttcctcctttatgctcgctgacaattctgtgt 526
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 catttgtttttcctcctttatgctcgctgacaattctgtgt 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 927
Length adjustment: 10
Effective length of query: 516
Effective length of database: 917
Effective search space: 473172
Effective search space used: 473172
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no368_h16.g1 MSMg01no368_h16.g1 CHROMAT_FILE:
MSMg01no368_h16.g1 PHD_FILE: MSMg01no368_h16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:56 2005
(496 letters)
>mm_chr5_65038208_65039109
Length = 902
Score = 897 bits (464), Expect = 0.0
Identities = 490/502 (97%), Gaps = 6/502 (1%)
Strand = Plus / Plus
Query: 1 ttttgtcacaggtgccttcctctgggagttatgggagttttcaaggctgcatgaattctt 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 ttttgtcacaggtgccttcctctgggagttatgcgagttttcaaggctgcatgaattctt 260
Query: 61 aatcccagatcccctcccgtctgccacccaagcctttcccaaaccggttattcctaaagt 120
||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||
Sbjct: 261 aatcccagatcccctcctgtctgccacccaagcctttcccaaaccgattcgtcctaaagt 320
Query: 121 cagggttccaatgctcagaagaggcaaactcaggcaaacccggctcgtcagaaaacagcc 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagggttccgatgctcagaagaggcaaactcaggcaaacccggctcgtcagaaaacagcc 380
Query: 181 atgcctgctacaaaaatctgttgcccccaaactcgctagtgcatttcattacctttcaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgcctgctacaaaaatctgttgcccccaaactcgctagtgcatttcattacctttcaac 440
Query: 241 gatcggtttagaattattcacctcgctgcccttaactatccacttgactgccttcatcat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatcggtttagaattattcacctcgctgcccttaactatccacttgactgccttcatcat 500
Query: 301 tagcatggagggcggaaccgaggctggcctgtattctcttcagagccccagtcacttctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagcatggagggcggaaccgaggctggcctgtattctcttcagagccccagtcacttctg 560
Query: 361 attagtgaattgcttagaaaatgtcctgagctctagccggcca------gttagtgtcct 414
||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 561 attagtgaattgcttagaaaatgtcctgagctctagccggccactgccagttagtgtcct 620
Query: 415 gtcccggagaagcgctcatttgtattctgtctgtgggtcagagtggaggccacgggttag 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtcccggagaagcgctcatttgtattctgtctgtgggtcagagtggaggccacgggttag 680
Query: 475 tgaggtggggggtagggcagcg 496
||||||||||||||||||||||
Sbjct: 681 tgaggtggggggtagggcagcg 702
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 902
Length adjustment: 10
Effective length of query: 486
Effective length of database: 892
Effective search space: 433512
Effective search space used: 433512
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
