BAC Information

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BAC

Clone NameMSMg01-368L01
Chromosome5 (Build37)
Map Location 10,461,002 - 10,461,628
singlet/doubletsinglet
Overlap geneLOC100041395
Upstream gene9330182L06Rik, Grm3, LOC100042768, LOC625446, LOC435832, LOC381612
Downstream geneEG625586, LOC242809, LOC623849, LOC100041408, LOC667880, EG667888, EG667901, EG667907, LOC667916, LOC100041472, EG545728, LOC100042819, LOC667942, LOC667948, EG667949, Speer1-ps1, EG667956, LOC667961, EG667967
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368L01.T7 (MSMg01no368_l01.b1)MSMg01-368L01.TJ (MSMg01no368_l01.g1)
ACCAG475855AG475856
length736736
length of high quality
(start - end)		631 (45 - 675)534 (70 - 603)
definitionCHROMAT_FILE: MSMg01no368_l01.b1 PHD_FILE: MSMg01no368_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:12 2005CHROMAT_FILE: MSMg01no368_l01.g1 PHD_FILE: MSMg01no368_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAGTTAGGAAATTATATTACTTTTATAACATACACTCAAACTTCAA
TTTTATTTCCCTTGGATTATTTTTAAACTTTCAGAAAATGATTTATGAAT
GATAATGTTTATGGAGATGCTGAGGCTTACTCTGGATTTCTGTTTCTTTA
ATAAAATGTTATGACCAAGAGCCATTTAGAAAAGAAAATTGTTATTTCTT
ATTACCTCTGCCTTCATTTTGATATCATAGTCTGTCACTGAGGACAATCA
GTGCAGGAACTTACAGAAAAAACCTGGAGTCAGTAGGTGAGCCAGAGGTC
AAGGAAGGGAGCTGATTTCTGCCTTGCTTTCCCCTAACATTGTACAAAAT
ATTTCTCAATATTGACCATTTAGAAAAGAGCAATATTAGTCTGAAACTCA
TAGTCCTCCATCCATTTTCTGAGTGTTGAGATCATAGGTTGCTGAAGTAC
ATGTGGCTTAATAAAATTCTTGGAAGGTCCACTTCTATTTCCTGAAATTA
GGTACAAATTATATGCAAATCTTTACCTGGGAAAATATGAATCAAAGATG
GTTCCTCACGAAGTGCATTCAATTAAATTGAGCCAGGGCAACTCTAAATA
AGTATTACTGTATGTGTAATTACGCAGATGTGTTTTAGAAAGAATAGTAA
AACTTATTATAAAATTACAATGGGTTTAGAAACAAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCATTTTTTTACTACATATTTTTTTGAGATTT
TTGTTTAATTACTAAGTTAATTCTCTTTGCTCCCTCCAAAACCTCCCATA
CACCTCTACCCACTCTCTTTAAAAGTCATGGCCTCTTTTTTAAATTAATT
GCTATTGAAAGAACATTTGTATGTGTAGATGCACATGTATTCCTAAATAT
AACCACCTCAAGTCATATAATGTTACTTGTATGTATGTGTTCAGGGCTGG
CCTTTTGGCACTAGAAAACAAATTGATGTGCACTTCCCTAGGTAAAACTA
CCTCTTAGCTTTCCCAGCTTTCTTCAGGTGCCTATAGTAATTTTGTGCTC
AGGTAAGGCTCATGGGCTTTTCCTCTTCCACTTTGGCATGAACAAATTGT
CATCCGTTTTCAGATCAGTTTTCAGTAGTCATGTTGGTGAGAATTTATGT
GTAAGGCTTTAGTATAGCTAGGAAAAAAATCTCACAGAAAATTCCTTGGT
CTTCTGGCTCTTACAATATTTTTGCTCCGACTTCTATGATGTTCCCTTAG
CCTTAGGTATGGGACGGTTTTATAGGTGAATCCATTGACCTGAGTGGTCT
TTAACTGTTCTAATGAAGAGCTTCCTCAATGAGGATTGATTACACTTAAC
TGCCGAAATAAATGCAAAAATTTATAATTGTTAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_l01.b1 MSMg01no368_l01.b1 CHROMAT_FILE:
MSMg01no368_l01.b1 PHD_FILE: MSMg01no368_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:12 2005
         (631 letters)



>mm_chr5_10460798_10461828
          Length = 1031

 Score = 1205 bits (623), Expect = 0.0
 Identities = 626/627 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctagttaggaaattatattacttttataacatacactcaaacttcaattttattt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctagttaggaaattatattacttttataacatacactcaaacttcaattttattt 264

                                                                       
Query: 65  cccttggattatttttaaactttcagaaaatgatttatgaatgataatgtttatggagat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cccttggattatttttaaactttcagaaaatgatttatgaatgataatgtttatggagat 324

                                                                       
Query: 125 gctgaggcttactctggatttctgtttctttaataaaatgttatgaccaagagccattta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 325 gctgaggcttactctggatttctgtttctttaataaaatgttatgaccaagagtcattta 384

                                                                       
Query: 185 gaaaagaaaattgttatttcttattacctctgccttcattttgatatcatagtctgtcac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaaaagaaaattgttatttcttattacctctgccttcattttgatatcatagtctgtcac 444

                                                                       
Query: 245 tgaggacaatcagtgcaggaacttacagaaaaaacctggagtcagtaggtgagccagagg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgaggacaatcagtgcaggaacttacagaaaaaacctggagtcagtaggtgagccagagg 504

                                                                       
Query: 305 tcaaggaagggagctgatttctgccttgctttcccctaacattgtacaaaatatttctca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcaaggaagggagctgatttctgccttgctttcccctaacattgtacaaaatatttctca 564

                                                                       
Query: 365 atattgaccatttagaaaagagcaatattagtctgaaactcatagtcctccatccatttt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atattgaccatttagaaaagagcaatattagtctgaaactcatagtcctccatccatttt 624

                                                                       
Query: 425 ctgagtgttgagatcataggttgctgaagtacatgtggcttaataaaattcttggaaggt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctgagtgttgagatcataggttgctgaagtacatgtggcttaataaaattcttggaaggt 684

                                                                       
Query: 485 ccacttctatttcctgaaattaggtacaaattatatgcaaatctttacctgggaaaatat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ccacttctatttcctgaaattaggtacaaattatatgcaaatctttacctgggaaaatat 744

                                                                       
Query: 545 gaatcaaagatggttcctcacgaagtgcattcaattaaattgagccagggcaactctaaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gaatcaaagatggttcctcacgaagtgcattcaattaaattgagccagggcaactctaaa 804

                                      
Query: 605 taagtattactgtatgtgtaattacgc 631
           |||||||||||||||||||||||||||
Sbjct: 805 taagtattactgtatgtgtaattacgc 831


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space:   634041
Effective search space used:   634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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