Query= MSMg01no368_o04.b1 MSMg01no368_o04.b1 CHROMAT_FILE:
MSMg01no368_o04.b1 PHD_FILE: MSMg01no368_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:27 2005
(502 letters)
>mm_chr5_81858424_81859325
Length = 902
Score = 824 bits (426), Expect = 0.0
Identities = 473/498 (94%), Gaps = 16/498 (3%)
Strand = Plus / Plus
Query: 5 gaattccaggtataactttaaagctcatccataactgtaaacaatgggaaatgcatccct 64
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaagtagaactttaaagctcatccataactgtaaacaatgggaaatgcatccct 264
Query: 65 tgatagcatattttttctatatttttctaagttcctatgtctcaacaaggatgaaatggc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgatagcatattttttctatatttttctaagttcctatgtctcaacaaggatgaaatggc 324
Query: 125 tcctgaaatatgtgacttctatatagtatgcttaaatatttgaccactatagactataca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcctgaaatatgtgacttctatatagtatgcttaaatatttgaccactatagactataca 384
Query: 185 cttcttccttccttccttccttccttccttccttccttccttccttccttccttccttcc 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 385 cttcttccttccttccttccttccttccttccttccttccttccttccttccttcctttc 444
Query: 245 ttccttccttccttccttcctttctttctttcttttcttttattggatattttatttatt 304
|| || |||||||||||| | |||||||||||||||||||||||||
Sbjct: 445 tt---tc-------------tttctttctttcgtctcttttattggatattttatttatt 488
Query: 305 tacattttagatgtcctcccctttccctgtttccctgtatcccatccccacccacctacc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tacattttagatgtcctcccctttccctgtttccctgtatcccatccccacccacctacc 548
Query: 365 ttcccccacctcaccacgctagcattcccccacagtggggcatcaagccttcagaggacc 424
||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 549 ttccctcacctcaccactctagcattctcccacagtggggcatcaagccttcagaggacc 608
Query: 425 aatggcctttcctcccattaatgccagatagggccatcctctgatacatatgcagctgga 484
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 aatggccttttctcccattaatgccagatagggccatcctctgatacatatgcagctgga 668
Query: 485 ggcatgggtccctccatg 502
||||||||||||||||||
Sbjct: 669 ggcatgggtccctccatg 686
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space: 438864
Effective search space used: 438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no368_o04.g1 MSMg01no368_o04.g1 CHROMAT_FILE:
MSMg01no368_o04.g1 PHD_FILE: MSMg01no368_o04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:27 2005
(339 letters)
>mm_chr5_82045206_82045949
Length = 744
Score = 611 bits (316), Expect = e-179
Identities = 335/344 (97%), Gaps = 5/344 (1%)
Strand = Plus / Minus
Query: 1 ctaagcttccagatctcagagtgattttcttttgtcttgtttaaggttgatatttaacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ctaagcttccagatctcagagtgattttcttttgtcttgtttaaggttgatatttaacaa 485
Query: 61 gtacatgcagaccgatcgatgcggcactacttttaattcttaaaattagattatgacagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gtacatgcagaccgatcgatgcggcactacttttaattcttaaaattagattatgacagg 425
Query: 121 taggagaaaataacgtgtcctccaagtgggcttgagaggatactcaggagacactggtgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 taggagaaaataacgtgtcctccaagtgggcttgagaggatactcaggagacactggtgt 365
Query: 181 tttaggaagtaagaggaacatcccccggggaaggtgtatgataagtacctcagttcggag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tttaggaagtaagaggaacatcccccggggaaggtgtatgataagtacctcagttcggag 305
Query: 241 ctgtctatattttttgagaagcttggaatcctgagca-----aactgtctgtgcagtaag 295
|| |||| | |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 304 ctatctagaggttttgagaagcttggaatcctgagcattacaaactgtctgtgcagtaag 245
Query: 296 caggaggaagaaagtgaagtggctgggcgccttccctaaccaca 339
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 caggaggaagaaagtgaagtggctgggcgccttccctaaccaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 744
Length adjustment: 9
Effective length of query: 330
Effective length of database: 735
Effective search space: 242550
Effective search space used: 242550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
