BAC Information

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BAC

Clone NameMSMg01-369C08
Chromosome5 (Build37)
Map Location 151,374,372 - 151,374,732
singlet/doubletsinglet
Overlap geneB230342M21Rik
Upstream gene4930434E21Rik, Hsp110, EG433968, B3galtl, LOC100040089, Rxfp2, LOC667470, Fry, LOC100042068, Gm5, XM_359419, Brca2
Downstream geneBC037393, Aprin, LOC100040180, Kl, LOC667510, Stard13, LOC630708, LOC625175, LOC100042166, EG435877, EG632649, EG632671
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369C08.T7 (MSMg01no369_c08.b1)MSMg01-369C08.TJ (MSMg01no369_c08.g1)
ACCAG476204AG476205
length766791
length of high quality
(start - end)
363 (64 - 426)413 (74 - 486)
definitionCHROMAT_FILE: MSMg01no369_c08.b1 PHD_FILE: MSMg01no369_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:47 2005CHROMAT_FILE: MSMg01no369_c08.g1 PHD_FILE: MSMg01no369_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGTCGCTATACGACTCACTATTTCCAGAGGATCCGCGGAATTCTTAGT
AATATCGGCAAATAAGAAGAATCAGTACCATTATAGTCAAACCCTGTAGA
CAGCAGTGTCAGGACAAACTCCTCCCTCTAGCTTGTAGTCTAACGGTGTA
AATAATTCTGCTTTCGCAAAATACCAGTTTTTAAGAATCATCAAGTGATT
TCTAAAATGATGCCTTTTAACGTGTTATTAATTAGTAACCCAGTTATTTA
GGAGTGCAAAGCAAGGAAGCAGCCAGGGTGATACAAGGAGATATGAAAGC
CATGCCCACCTGTATGAGCAGTCTGGCTGTTGTATGTGGTGTTGAGACAG
TAAACTGTGGAATGCCCCTCATATCAATTATGGATGTATGAGTCCAAATT
AAATCCCAGCATGCTGGAGTCAGATTCATTGGTATGAGAACGTGACTAGA
CCATGTGAAATGTATGCTCTATTTATTTTTGGCCAATATCTTTCTTCTAA
TGTTTTGTGAGATACTATTTTAAGTGTCTTATTTTATGTTTTCTTTATGA
GTATTATTATTGCATATGTTATCGAATTTATTTTGGATTTATTTTTTCTT
TTTATTATTTTTTTTTTTTTCACTTCTCTTTTTTCTCTCCTTCATCTTCA
CATTCTTTCTTTCCTTTTTCCCCCTTCTTTTTCTCTTTTTTTTTTTTTTC
CACTTACTTTTTTGCTCCAGCTCTCACTGCCCTCCCCTTCTTTCTTTTAT
TTTTTTTCCCTCCTCT
TTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGCCAGGCCAGAACTTGTCTCAATA
AACTAATCAATTAAAATTTATGGTGGCTACTCCGGGAACACCAGGAAAAT
GATGCCTTAACGGCTCATGTAGGTTTCTTTAAAACCTTGATAATGTCCAG
AAACTGTCCACAGTTCGGAGGGCGCTTTCTCCACCATCCTCCCCACAGAG
GACATTGATATGAGTGACCTCCGACCGGTGCCAGAAAGCCAATAAGTTTT
CTGCCATCCTGAGACCGACCAGAGTCTGATCATAGAACTTCTGGAGCTGC
AGGCCCACTTGCAGGGCGAAGCGGCTGCGCCTGCGGCTGCGCGGTACCAT
TTTGAGGACATTGGCGGGGTGCAGGGGGCTAGGGCTGCGCACGTGCTATC
TGTGCAGCCTCACTGCTTGGAGGACTTATCCCCGAGAGGCTGCTGTCAGG
ATGCCTGGGTCCTTCCTGGTTAGCAGCAGGTATCAAAGGATGTCGCACTG
CATCAGGCCTTGCTTTCGTCTGCCCCATGATCAGAACTGATCTTTTGCTC
TCCTTCTAGCAGTCTCCCCCCTCCCTCTCCCCTTGTGTTTCTTGGTCCCT
GTCCGGTCCTTTTGGCCCTTGTAATTTTTTTTTTGCCCTCCCTCTTAATT
TGTGTCACACTTTTTAACCTCTGCTACTATTTTTCGGCCCTTTTCTCTTT
TTTCCCTCCCCTCCTCTTGTCCCCCTCTTTATTCTCCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_c08.b1 MSMg01no369_c08.b1 CHROMAT_FILE:
MSMg01no369_c08.b1 PHD_FILE: MSMg01no369_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:47 2005
         (363 letters)



>mm_chr5_151374172_151374932
          Length = 761

 Score =  667 bits (345), Expect = 0.0
 Identities = 358/363 (98%), Gaps = 2/363 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagaagaatcagtaccattatagtcaaaccctgtagacagcagtgtcaggacaaactcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagaagaatcagtaccattatagtcaaaccctgtagacagcagtgtcaggacaaactcct 502

                                                                       
Query: 61  ccctctagcttgtagtctaacggtgtaaataattctgctttcgcaaaataccagttttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccctctagcttgtagtctaacggtgtaaataattctgctttcgcaaaataccagttttta 442

                                                                       
Query: 121 agaatcatcaagtgatttctaaaatgatgccttttaacgtgttattaattagtaacccag 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 agaatcatcaagtgatttctaaaatgatgccttgtaacgtgttattaattagtaacccag 382

                                                                       
Query: 181 ttatttaggagtgcaaagcaaggaagcagccagggtgatacaaggagatatgaaagccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttatttaggagtgcaaagcaaggaagcagccagggtgatacaaggagatatgaaagccat 322

                                                                       
Query: 241 gcccacctgtatgagcagtctggctgttgtatgtggtgttgagacagtaaactgtggaat 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcccacctggatgagcagtctggctgttgtatgtggtgttgagacagtaaactgtggaat 262

                                                                       
Query: 301 gcccctcatatcaattatggatgtatgagtccaaattaaatcccagcatgctggagtcag 360
           |||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||
Sbjct: 261 gcccctcatatcaattatggatg--tgagtccaaattaaatcccagcaggctggagtcag 204

              
Query: 361 att 363
           |||
Sbjct: 203 att 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 761
Length adjustment: 9
Effective length of query: 354
Effective length of database: 752
Effective search space:   266208
Effective search space used:   266208
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)