BAC Information

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BAC

Clone NameMSMg01-369M05
Chromosome5 (Build37)
Map Location 98,254,790 - 98,255,038
singlet/doubletsinglet
Overlap genenone
Upstream geneAnxa3, EG666266, LOC670358, Bmp2k, Paqr3, LOC100040598, EG433923, EG666293, C80008, Gk2
Downstream geneAntxr2, EG435856, LOC666315, LOC666320, LOC666326, Prdm8, Fgf5, 1700007G11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369M05.T7 (MSMg01no369_m05.b1)MSMg01-369M05.TJ (MSMg01no369_m05.g1)
ACCAG476670AG476671
length782789
length of high quality
(start - end)
246 (65 - 310)260 (64 - 323)
definitionCHROMAT_FILE: MSMg01no369_m05.b1 PHD_FILE: MSMg01no369_m05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:35 2005CHROMAT_FILE: MSMg01no369_m05.g1 PHD_FILE: MSMg01no369_m05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGGTC
CTCGCCTAAAGAACCACCTCCCACAGCCCCCAGAACAGAAGCATGGTCAG
TAGTCACATAAGCAGCGGCCCAAGCTTCTTTCAGGCTAAACTCCTCCCCA
GTTACCTAGCAACAGTGAAGACCATAAAAAGGGGTGCTCATCCCCCACCA
TGCTCTCTTACTCTTACTCTCACTCTTTTGTTCCTTTACCTCTCACTTGT
CTCACTTCTTTCTCCTCTCTCCTCTTGTCTTCCTCTCTCCCCTCTCTCTC
CTCTCTCTCCTCCTTTCTCTCTCCTCTCTCTCCCCTCCCCCCTTTTCTCT
TTCCTCCTGCATCTCTATAATAGAGCTCTTTAACCTCATAGAGTCTCTCT
GCCCCTCCTAGTCTTGTTGCGCACTTTGTTCTGCGCTGCTAATTCCTCTT
CTTTCTCCTCTTCCTCTATCACTCTGTTTTGCTAGTCTGTTATCTCTTTG
TGTTTCTGTTTCCCTATCCACTCCCCTTTTTTCTTTCTATTTTTATTTCT
TCTTGTCTTTCCTTTTTTCTCTATTTCCTACTTTTATTTGGTCCATCCAT
CTTTCTTATTCCTTTCATATTCCCCTGTATTATTATTGAAATTCCTTTTT
CTTTCTGTTTCCTTTTTTTTACCCTTCCTTCCCTTTTTACCTTTTTTTTC
TTCCTCCTTTTTATTTCTTCACCCCTCTTTTACTTGTCTTTCTTTTCTTA
TTTTATTTACATTCTTTTTTTCTTTTCTTATA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCCTGATTTGCTCTGGCAGAACATGTTTTATAGGTGAT
GTTAAATGCAGATAACACGTTTATGTTCTTTGGTTATCAGTAGCTTAGGC
AAAATGATCTCTAATTGTGAGGAATTCTATTAATCACAAACGAAATCTAC
TTAATTTGAACAAGTTTTATAGTAAAAATATGTTGAAAGAGATATCTGAG
GGAAATATACTACTTAAATTTTTCTTATAGGATATAAAAAAGTATATCTT
GGTGGTTTGTTTTTTTATAAGTCAGAAAAGTTGGTGGACAGCAGTTGGCG
TACATAAGCAATTTTCCTATGGTTAGCTGCCGAAACTAATATAAACATTT
ATTTCCCCAGATTTAACAAAGCGTATCTTGTGAAGGCCTGAGCATTATTA
AGAGTATATTCTAAGTCTTTCTATCCGAATAAAGATTGGCCACATACGTG
AAAGAATATATTGCCAACTGTGCTATGTTAGACTTACCTATACTTTGATC
ACAGATTACGCTTGTTATTGGTATACTTTTATTTCTTTTACCGCGCTTCA
TTATTTTCTTTGATTCTTTCTCTCACTGCTTGTTTATATAACGCATTTGC
TTAGTTTCTCTTTTTTTATTTATTCTTCTTTTTCCTTTCTTTTCTTATTT
CCTCGCACTATTTTCTATTGTTTCCTCCTCCATATTTCCATATTTAACTC
CACTCTTCCTCTTTCACCCTCTTTTATTTTCCTCCACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_m05.g1 MSMg01no369_m05.g1 CHROMAT_FILE:
MSMg01no369_m05.g1 PHD_FILE: MSMg01no369_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:35 2005
         (260 letters)



>mm_chr5_98254590_98255249
          Length = 660

 Score =  443 bits (229), Expect = e-129
 Identities = 244/249 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctgatttgctctggcagaacatgttttataggtgatgttaaatgcagataacacgttta 60
           |||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 cctgatttgctctggtggagcatgttttataggtgatgttaaatgcagataacacgttta 390

                                                                       
Query: 61  tgttctttggttatcagtagcttaggcaaaatgatctctaattgtgaggaattctattaa 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 389 tgttctttggttatcagtagcttaggcaaaatgatctctagttgtgaggaattctattaa 330

                                                                       
Query: 121 tcacaaacgaaatctacttaatttgaacaagttttatagtaaaaatatgttgaaagagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tcacaaacgaaatctacttaatttgaacaagttttatagtaaaaatatgttgaaagagat 270

                                                                       
Query: 181 atctgagggaaatatactacttaaatttttcttataggatataaaaaagtatatcttggt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 269 atctgagggaaatatactacttaaatttttcttataggatataaaaaagtatattttggt 210

                    
Query: 241 ggtttgttt 249
           |||||||||
Sbjct: 209 ggtttgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 660
Length adjustment: 9
Effective length of query: 251
Effective length of database: 651
Effective search space:   163401
Effective search space used:   163401
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)