BAC Information

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BAC

Clone NameMSMg01-369M14
Chromosome5 (Build37)
Map Location 51,939,662 - 51,939,973
singlet/doubletsinglet
Overlap genePpargc1a
Upstream geneLOC100041015, LOC242987, EG624734, LOC666265, LOC100041059
Downstream geneDhx15, Sod3, Gm447, LOC100041805, Lgi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369M14.T7 (MSMg01no369_m14.b1)MSMg01-369M14.TJ (MSMg01no369_m14.g1)
ACCAG476688AG476689
length768787
length of high quality
(start - end)
316 (39 - 354)449 (77 - 525)
definitionCHROMAT_FILE: MSMg01no369_m14.b1 PHD_FILE: MSMg01no369_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:36 2005CHROMAT_FILE: MSMg01no369_m14.g1 PHD_FILE: MSMg01no369_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCT
GCTATTAATAACCGCCGTGTCTGTCTTCTTTGCAGTGTGCTGCTCTGGTT
GGTGAGGACCAGCCTCTTTGCCCAGATCTTCCTGAACTTGACCTTTCTGA
ACTTGATGTGAATGACTTGGATACAGACAGCTTTCTGGGTGGATTGAAGT
GGTGTAGCGACCAATCGGAAATCATATCCAACCAGTACAACAATGAGCCT
GCGAACATATTTGAGGTAAGCCTCTCCCCTGGAGAAATGAGCTTCTCTCT
GACGGCAGCGGCTTGACTGATCTTCATGTCTGACTGATGTATGGGGAGCT
GGACTCCAGTATGTATGGGCTCTTACATTGTTGCCAACAGGAAACGTGTC
TTCACCCCTAGAGAGTTTCTCTTATGGAAAAAAAATGTTATTTGTAAAAA
CGGGTCTTTTTATAATTATTGTGCTAATGACTACCGAGTGTGCTTTACTG
TGTTGAATTCTCAATTTTGTTAATACTTTCTATACCTGGTCCATAACCTT
GTTTAACCTTTTTTCTCTTCTTCTTTTCCTTCAATTTTTTCAATTAGTAA
AATGATTTCTGTATCGCATTTATTTTTTTTTCTATTTTTTTTCCCACCTT
CCTACTCTCACCTTTTTTCCCCCCTCTCTCTCCTTTATTATTTCTTTTCC
CGTATTCTTTGTTTCCCCTCTCTTTATATCTCCTTCTCTTATCTTTTCCT
TTTTTTTCCTCTTCCTCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGAGCCACTTCCTCATGGAAACA
AAGAGTACATTCTATGTATTTGAACTGTATATTACCCATGAGAAACTGTT
TTTTGATACGTCATGTGTGGCGATTTGAATGGTTATGGTTCTCAGAGGCC
CACATGTTTTTATGTTTGGTTCCCAGTTAGTTGACCTGTTTGGGAAAGAG
TAGAAGGTATGGCTTTGCTAGAATAGGTGTGGCCTTGCTGAAGGAGGTGT
GTCACCAGGGGTGGGCGTTATGGTTTCAAAAGCCCTTGTCTGGCTCAGGT
TGACTCCCTCTGCCTGCAAGTTTTGGGTCAGAAGTAAGCTCCCAGCTTAT
ACTTCATCACTTTGCCTGCCACCATGCTTGCCACCATGATGATCGAAGAA
CTAGCCTTCTGTAAGCAAGTTTCCAACTAGAGCTTCTTTTTATAATCTGC
CTTGATCATGGTGTCTCCTTATAGAAATAGAACAGGGGCTAAAACCACAT
GGTAGTTGTTACCTATTTTCAACACTTATGAATATATTGCGGATTTTTGA
TTTTAATATTAAAATGATTCCAGTTCTATACTATCTTTTCTCGAATTTTT
TCTTTATTTTTTAAGGCAATTGGGAAGGAAACGCCCCCCAAATGCATTTT
TTTCCCTTCTTTTGAACGATATCCGGTTTTTTCTCCCCCTTAAACTTTTT
GGTCAAAAGCGGGGGATTCTCTTATGTTTTTTCAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_m14.b1 MSMg01no369_m14.b1 CHROMAT_FILE:
MSMg01no369_m14.b1 PHD_FILE: MSMg01no369_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:36 2005
         (316 letters)



>mm_chr5_51939458_51940173
          Length = 716

 Score =  596 bits (308), Expect = e-175
 Identities = 311/312 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgctattaataaccgccgtgtctgtcttctttgcagtgtgctgctctggttgg 64
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaattcctgccattaataaccgccgtgtctgtcttctttgcagtgtgctgctctggttgg 457

                                                                       
Query: 65  tgaggaccagcctctttgcccagatcttcctgaacttgacctttctgaacttgatgtgaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tgaggaccagcctctttgcccagatcttcctgaacttgacctttctgaacttgatgtgaa 397

                                                                       
Query: 125 tgacttggatacagacagctttctgggtggattgaagtggtgtagcgaccaatcggaaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tgacttggatacagacagctttctgggtggattgaagtggtgtagcgaccaatcggaaat 337

                                                                       
Query: 185 catatccaaccagtacaacaatgagcctgcgaacatatttgaggtaagcctctcccctgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 catatccaaccagtacaacaatgagcctgcgaacatatttgaggtaagcctctcccctgg 277

                                                                       
Query: 245 agaaatgagcttctctctgacggcagcggcttgactgatcttcatgtctgactgatgtat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 agaaatgagcttctctctgacggcagcggcttgactgatcttcatgtctgactgatgtat 217

                       
Query: 305 ggggagctggac 316
           ||||||||||||
Sbjct: 216 ggggagctggac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)