BAC Information

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BAC

Clone NameMSMg01-370C22
Chromosome5 (Build37)
Map Location 60,470,952 - 60,471,406
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041425, LOC546866
Downstream geneCbfa2t2-ps1, LOC100041498, LOC666597
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370C22.T7 (MSMg01no370_c22.b1)MSMg01-370C22.TJ (MSMg01no370_c22.g1)
ACCAG476990AG476991
length795792
length of high quality
(start - end)		459 (39 - 497)385 (69 - 453)
definitionCHROMAT_FILE: MSMg01no370_c22.b1 PHD_FILE: MSMg01no370_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:08 2005CHROMAT_FILE: MSMg01no370_c22.g1 PHD_FILE: MSMg01no370_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAG
GTGAGAGAGAAAATACAGAGAATATATCTTGAGGTAACCATTTGTTAATG
TATTCTCTATGAGGATCAGAGTATGTGTATGTGACAGTTGTCATGAACAG
GTAGCCATAGATGCCTTGGGAGCTTTGCCGCAACTCAACAGAGGCCTATA
AACTTAAAAGAGAGGGTGATTATAATGTAGCAAAAGAACTTGAAGCCCAT
TAAAGTTGCAAGACAGGTGTGATTTCTAACACAAGGAAGTATGATGAAAT
TTCAAGATATCTGCACCTTTGAATTCATTAGTTACTATGAGGAAGGCAGG
GATTTACAGGTTCTTTATGCATGATGCATAGGTAACCACCTCATATTATC
TTCTCACACTATAGAATTTATATAGATGTTCAAGAACACCAAGGCATCCA
ACCATAACATATAAGCAGAGGACCTAGGTCAGAGTCATACAGATTTCATG
ACTGTCATGTAGGTCTCTGTGAAACCCTTCTAGCCCTGCTTAAAGAAGTT
TAAAAACTGTTTATAGTCCCTATTCTCCCAAGCGATTATAAAATTTCTTT
TTTTCAAGGTCACGGAAAAAAAAAACCAACCTTTATATGCCTCCCTTTTT
AAAATGAAAAAATTTCACCGCCGAATTATTTTTCCGCGTTCAAAAACAAT
AAAAAGTCTTGCTGCCCCCCGTCCCCTATTTCTATTCTTTGTTCTTTCCT
TCCGGGGCTTTAATATCCTTTCTCCCTCTTCTCGCTATCCCCTTT

AGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATTGCCACAGGAGAAAAAAAAAAGTCCTGAAC
AAAATGCCAATGGCTCAGGCATTAAAATCAACAATTGATAAATGATGCCT
CTTGAAACTGAACAGCTTCTATAAGGCAACGAGATCCACAGGCAGGCAAC
AGATTCTGGTACAGCCCCCTCTCCTGTTGTTAGATGACTTGCATGAAGGC
CAAGCTGCACATCGGCTACACATATGCAGAAGGGGTCCTGGGTTCAGCCT
ATACTTGCTTTTTGCTTGGTGGTTAGGTCTCCCTAAGAATCCAATTTAGG
TTGTTGGCCTTCCTGCCGAGTCCCTATCTGCTTCAGATCCTTCAATTCTT
CCCCAACTCTCCCAGATGACTCTTGGAGCTCCATTTAATGTTTGGCTTTG
GATTTCTACAGCTGTTTCCACATGCTGCCTGGTGGAGCTGCTCACAAAAC
AGTATGATAGCCTCCCGTCTGCCAGCATAACATTTCCTTAATATTGCCCG
GTATTCACCACAAGGTTGGGGGTTTTTTTAAATTTCCCAAAAACCGTGAT
TGTTGTGGTCTACAAATATCTCTTCCCTCTTTCCTTTTTCCTTACTCCTT
TCTCCTCCCTTCTTTTCCTCTCTCCTTTTCTTTTTTCTCCCTTTACCTCT
TCTCTTCCTTCCTTTCTTCACTTTTTCCTCCTCTACTCTCTCTTTTCTCT
CTTATTTACTTCTCCCTCCCCCCTATTTTTCTCCTCCTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_c22.b1 MSMg01no370_c22.b1 CHROMAT_FILE:
MSMg01no370_c22.b1 PHD_FILE: MSMg01no370_c22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:08 2005
         (459 letters)



>mm_chr5_60470748_60471606
          Length = 859

 Score =  864 bits (447), Expect = 0.0
 Identities = 453/455 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaggtgagagagaaaatacagagaatatatcttgaggtaaccatttgttaatgta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 gaattcaggtgagagagaaaatacagagaatatatcttgaggtaaccatttgttaatgta 600

                                                                       
Query: 65  ttctctatgaggatcagagtatgtgtatgtgacagttgtcatgaacaggtagccatagat 124
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ttctctatgagggtcagagtatgtgtatgtgacagttgtcatgaacaggtagccatagat 540

                                                                       
Query: 125 gccttgggagctttgccgcaactcaacagaggcctataaacttaaaagagagggtgatta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 gccttgggagctttgccgcaactcaacagaggcctataaacttaaaagagagggtgatta 480

                                                                       
Query: 185 taatgtagcaaaagaacttgaagcccattaaagttgcaagacaggtgtgatttctaacac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 taatgtagcaaaagaacttgaagcccattaaagttgcaagacaggtgtgatttctaacac 420

                                                                       
Query: 245 aaggaagtatgatgaaatttcaagatatctgcacctttgaattcattagttactatgagg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 aaggaagtatgatgaaatttcaagatatctgcacctttgaattcattagttactatgagg 360

                                                                       
Query: 305 aaggcagggatttacaggttctttatgcatgatgcataggtaaccacctcatattatctt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 359 aaggcagggatttacaggttctttatgcatgatgcataggtaaccacctcatattgtctt 300

                                                                       
Query: 365 ctcacactatagaatttatatagatgttcaagaacaccaaggcatccaaccataacatat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ctcacactatagaatttatatagatgttcaagaacaccaaggcatccaaccataacatat 240

                                              
Query: 425 aagcagaggacctaggtcagagtcatacagatttc 459
           |||||||||||||||||||||||||||||||||||
Sbjct: 239 aagcagaggacctaggtcagagtcatacagatttc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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