BAC Information

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BAC

Clone NameMSMg01-370I14
Chromosome5 (Build37)
Map Location 143,933,812 - 144,074,675
singlet/doubletdoublet
Overlap geneRbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik
Upstream geneFoxk1, C330006K01Rik, D930005D10Rik, Papolb, Mmd2, Wipi2, Slc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809, Olfr718-ps1, LOC640324, LOC100042605
Downstream geneZdhhc4, Grid2ip, Kdelr2, LOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik, Pscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm, Lmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370I14.T7 (MSMg01no370_i14.b1)MSMg01-370I14.TJ (MSMg01no370_i14.g1)
ACCAG477261AG477262
length767790
length of high quality
(start - end)		547 (38 - 584)377 (68 - 444)
definitionCHROMAT_FILE: MSMg01no370_i14.b1 PHD_FILE: MSMg01no370_i14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:37 2005CHROMAT_FILE: MSMg01no370_i14.g1 PHD_FILE: MSMg01no370_i14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,933,812 - 143,934,354)(144,074,302 - 144,074,675)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCA
TGGCCATAGCGCCTCTTCACAGCAACACAACACATAAACAGCATGGTTTA
TCAAAATAGTATTTAAAAATTTTTTTTGCTCAATTCCAGTTGAAAATATT
TTTACAAAAACCACTCTACGGGTAAGCACCGACATAGAAAGCTATGTACT
TCCCTATCAGCTAGCACATCCCACCCATGTACCCACTGTAACAGTCATTT
TAATCCTTGCTGACATGTTCTCACAAATGATTCAAAGCCGAGATTGCAAA
ACATTGCATAGAGACTGTTCAATTGCGTGTCTAGAACAGCAGAAGTGCCG
TGTTTCAGTCACCCTCATGCTCAACTGCTGGCTTCATGACTTCATTTTAT
AAGTTTATTCGGAACTCATAGCTTCTTGCATCTTTTCCATGAACACCCGT
GGTAACGTCGGTCAGAAATATGGCTTTTAGTGTGCGTTTCCAAGGCGAGT
TATACTCAGGAGCTGACAGCTCACAGCAGAACTCCCTGATATGTAAATAC
GATTTAAATAAAAATAAATATTAAATACTTTCAAAGGTTCACTCCTGTAA
AGATGACCTAGTGTCCCATAAGTCATACGGGCATGGGTTGCTTCACAGAT
TCCTCTCTGAAAGGTCCAGTAAAATGGAACTTGTTTATGACCCCCCCTCC
AATAACGGGATGCTCACCTCGGAACCTGCATAAGGTTATATCCTGCACAA
GCCCCTATCTCCCCTCN

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACTCTGTAGACCAGGCTGGCCTCTAACTCACAA
AGATTTGCCATCCTTGGCCTCCCCAGATTAAAGGTGTGTGACACCACACC
CAGCCTTAAATTAATTTTTTGATAAACAAAACAAAAAGGCCTCATCTTCA
GAATAAATGGAAAATCTATTTCTCAGGCAAAATGATTGGATTTTTAAAAC
AGTATGCGGAGGGAAGGAGAGATGGCTTAGGAGTTAAGAGACTTGTTCAC
ACAAAGGACCCAAATCCAGTTCTTAGAGCACCCATATCCTGCTCCCAAGT
GCCTATAACTCCAGCTCCCGGGAATCCCTTCCCCCTGTTCTCCTTGAATG
CCTTTACGCACATGTATGGGTCTACTCAAACAGACACACGGNGCTACACA
CCATGGAAAGTAAAATCTTAAGAAAAACAAGTTTAACTATGTAGCTTAGG
CCAGGCTAAAACTTCCTAATTCTTTTTGCCCCAGGTTCCTATTGTTGAAA
CCAAACTTGACCCACCCACCCCCCTGGAGGAAATTTTTTTTTTTGGTGTG
CTCGGTTTGCTCTTCCAAAACATTCTTTCCCCACATTTCCTTTTTCCTTC
GGCTTTTATCTCCTCTTTTTCCTTCTCCCTTTCTTTTTTCCCCATTTTCT
TCCCTTTCTCTTCCTTTCACCACTTTTCCTCTTTCTACCTCCATCTTCCT
CCTATCTTCACTCCCCTCCCTTTCTTTTTCCCTCCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_i14.b1 MSMg01no370_i14.b1 CHROMAT_FILE:
MSMg01no370_i14.b1 PHD_FILE: MSMg01no370_i14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:37 2005
         (547 letters)



>mm_chr5_143933608_143934554
          Length = 947

 Score = 1035 bits (535), Expect = 0.0
 Identities = 541/543 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccatggccatagcgcctcttcacagcaacacaacacataaacagcatggtttat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccatggccatagcgcctcttcacagcaacacaacacataaacagcatggtttat 264

                                                                       
Query: 65  caaaatagtatttaaaaattttttttgctcaattccagttgaaaatatttttacaaaaac 124
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caaaatagtatttaaaaaatttttttgctcaattccagttgaaaatatttttacaaaaac 324

                                                                       
Query: 125 cactctacgggtaagcaccgacatagaaagctatgtacttccctatcagctagcacatcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cactctacgggtaagcaccgacatagaaagctatgtacttccctatcagctagcacatcc 384

                                                                       
Query: 185 cacccatgtacccactgtaacagtcattttaatccttgctgacatgttctcacaaatgat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cacccatgtacccactgtaacagtcattttaatccttgctgacatgttctcacaaatgat 444

                                                                       
Query: 245 tcaaagccgagattgcaaaacattgcatagagactgttcaattgcgtgtctagaacagca 304
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcaaagccgagattgcgaaacattgcatagagactgttcaattgcgtgtctagaacagca 504

                                                                       
Query: 305 gaagtgccgtgtttcagtcaccctcatgctcaactgctggcttcatgacttcattttata 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaagtgccgtgtttcagtcaccctcatgctcaactgctggcttcatgacttcattttata 564

                                                                       
Query: 365 agtttattcggaactcatagcttcttgcatcttttccatgaacacccgtggtaacgtcgg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agtttattcggaactcatagcttcttgcatcttttccatgaacacccgtggtaacgtcgg 624

                                                                       
Query: 425 tcagaaatatggcttttagtgtgcgtttccaaggcgagttatactcaggagctgacagct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcagaaatatggcttttagtgtgcgtttccaaggcgagttatactcaggagctgacagct 684

                                                                       
Query: 485 cacagcagaactccctgatatgtaaatacgatttaaataaaaataaatattaaatacttt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cacagcagaactccctgatatgtaaatacgatttaaataaaaataaatattaaatacttt 744

              
Query: 545 caa 547
           |||
Sbjct: 745 caa 747


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no370_i14.g1 MSMg01no370_i14.g1 CHROMAT_FILE:
MSMg01no370_i14.g1 PHD_FILE: MSMg01no370_i14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:37 2005
         (377 letters)



>mm_chr5_144074191_144074967
          Length = 777

 Score =  723 bits (374), Expect = 0.0
 Identities = 374/374 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctgtagaccaggctggcctctaactcacaaagatttgccatccttggcctccccaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 actctgtagaccaggctggcctctaactcacaaagatttgccatccttggcctccccaga 426

                                                                       
Query: 61  ttaaaggtgtgtgacaccacacccagccttaaattaattttttgataaacaaaacaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ttaaaggtgtgtgacaccacacccagccttaaattaattttttgataaacaaaacaaaaa 366

                                                                       
Query: 121 ggcctcatcttcagaataaatggaaaatctatttctcaggcaaaatgattggatttttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcctcatcttcagaataaatggaaaatctatttctcaggcaaaatgattggatttttaa 306

                                                                       
Query: 181 aacagtatgcggagggaaggagagatggcttaggagttaagagacttgttcacacaaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aacagtatgcggagggaaggagagatggcttaggagttaagagacttgttcacacaaagg 246

                                                                       
Query: 241 acccaaatccagttcttagagcacccatatcctgctcccaagtgcctataactccagctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 acccaaatccagttcttagagcacccatatcctgctcccaagtgcctataactccagctc 186

                                                                       
Query: 301 ccgggaatcccttccccctgttctccttgaatgcctttacgcacatgtatgggtctactc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ccgggaatcccttccccctgttctccttgaatgcctttacgcacatgtatgggtctactc 126

                         
Query: 361 aaacagacacacgg 374
           ||||||||||||||
Sbjct: 125 aaacagacacacgg 112


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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