Query= MSMg01no370_i16.b1 MSMg01no370_i16.b1 CHROMAT_FILE:
MSMg01no370_i16.b1 PHD_FILE: MSMg01no370_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:38 2005
(467 letters)
>mm_chr5_136662239_136663105
Length = 867
Score = 872 bits (451), Expect = 0.0
Identities = 460/463 (99%)
Strand = Plus / Plus
Query: 5 gaattcaaactggcggagcagtggtggcacacgtatttaatcccagcacttgggaggtag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaactggcggagcagtggtggcacacgtatttaatcccagcacttgggaggtag 264
Query: 65 aggcaagtggatttctgagttcaagggcagcctggtctacagagtgagttccaggacagc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 265 aggcaagtggatttctgagttcaagggcagcctggtctacagagtgagttccaagacagc 324
Query: 125 cagggctacacagagaaaccctgtctcgaaaaaccaaaaaaaaggaaaaaaagaaaaaaa 184
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 325 cagggctacacagagaaaccctgtcttgaaaaaccaaaaaaaaagaaaaaaagaaaaaaa 384
Query: 185 gattccaaactggctcatagccagccaggtgctgtcactcaaacccatgtcccacactgc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gattccaaactggctcatagccagccaggtgctgtcactcaaacccatgtcccacactgc 444
Query: 245 agggtgctgagttactacacagcacaaacacagccttaggcagctgcccttcctgctaag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agggtgctgagttactacacagcacaaacacagccttaggcagctgcccttcctgctaag 504
Query: 305 ctctcaatccccttttaagaagaaccagataacttcagatgcgttactgccaacctacag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctctcaatccccttttaagaagaaccagataacttcagatgcgttactgccaacctacag 564
Query: 365 gagctccacggtgtgctggggccaccttgtggcacactcgggcagcactacattaacttc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gagctccacggtgtgctggggccaccttgtggcacactcgggcagcactacattaacttc 624
Query: 425 tattcatttcaaccaggtatcaagaaaatcttattcttttaca 467
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tattcatttcaaccaggtatcaagaaaatcttattcttttaca 667
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space: 391649
Effective search space used: 391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no370_i16.g1 MSMg01no370_i16.g1 CHROMAT_FILE:
MSMg01no370_i16.g1 PHD_FILE: MSMg01no370_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:38 2005
(348 letters)
>mm_chr5_136829361_136830108
Length = 748
Score = 659 bits (341), Expect = 0.0
Identities = 347/349 (99%), Gaps = 2/349 (0%)
Strand = Plus / Minus
Query: 1 catgatggtgttacccctgtgcaggtagttgtataagaaagcaggctaagcaagccagta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 catgatggtgttacccctgtgcaggtagttgtataagaaagcaggctaagcaagccagta 666
Query: 61 agcagtattcctcagtggttcctgccttgaggtcctgccctgactacccttcagaatgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 agcagtattcctcagtggttcctgccttgaggtcctgccctgactacccttcagaatgta 606
Query: 121 ctataagctgtgaaatgaaataaa-ccgtgtcctagccaagttgttcttggtcacagtaa 179
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 605 ctataagctgtgaaatgaaataaatcc-tgtcctagccaagttgttcttggtcacagtaa 547
Query: 180 cagagaagcaaactaacatagtcagtaatcccacagtcactataatttagtgtagatatg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 cagagaagcaaactaacatagtcagtaatcccacagtcactataatttagtgtagatatg 487
Query: 240 ccatatttgtgcaggccccatgtgttaaagtgtgaacaattcattcagtgtatgagccac 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ccatatttgtgcaggccccatgtgttaaagtgtgaacaattcattcagtgtatgagccac 427
Query: 300 tcctagctcactgtgactgattctgtgggggcaggacgatgtgcagaag 348
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tcctagctcactgtgactgattctgtgggggcaggacgatgtgcagaag 378
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space: 250521
Effective search space used: 250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
