BAC Information

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BAC

Clone NameMSMg01-370J09
Chromosome5 (Build37)
Map Location 84,270,633 - 84,270,988
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039434, Srd5a2l2, LOC100039608
Downstream geneLOC231368, Epha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370J09.T7 (MSMg01no370_j09.b1)MSMg01-370J09.TJ (MSMg01no370_j09.g1)
ACCAG477298AG477299
length793752
length of high quality
(start - end)
343 (42 - 384)358 (74 - 431)
definitionCHROMAT_FILE: MSMg01no370_j09.b1 PHD_FILE: MSMg01no370_j09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:41 2005CHROMAT_FILE: MSMg01no370_j09.g1 PHD_FILE: MSMg01no370_j09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAGAAAAGATAATTCTGTAGTTGCACATTTGTTGGAAGAGATGACAATTA
TGGGGATGCCATCACAAAGTAAGACTGATAATGCCCCTGCATATGTTTCC
AGTAAAATGAAATGGTTTTTAGCTTATTATAACATAAAATATATTGCAGG
TATACCATATAATCCAACAGGTGAAGCAGTTATAAAAATATATAATCATA
CCTTAAAGTAAATGCTTAATAAACAAAAATGGGGAATAAGAACTGTGAGA
AATGACTGAATAATTCTTTATTAACTTTAAATTTTTTGAATGCTGAGACA
GAAACAATAGCTACTGAAAGACTCTGGAATGTAGGGGCAGGGGTGTGGAA
ACTGCTGAATCAGAATAACCTGTATAATTTTAAAGACATTTTAACATCAC
AATGGCAGTCCTCAAGCGCGTTATATTACAGAGGAATTTTCCTATACTTC
CAATGCTGATCAAACACTTTGCCCTCCCCCTTACATCGAGCTTTTCTCTT
TTTCAACCATTACCCCTTTTTTGCGCTTTATCTTACTTTTTTCATTCTCC
CACTTTTTCCTTTCTTCTTCATAAAACTTCCTCCTCTCTCCTTTATCCCC
TCTTTTCCCCCTCCCTCCTCTTTCCCCCTATTTTTCCCTATCCTAATATA
ATTCTTCCCCTCCTCCCTCTTTTCTCTTTCTCTTCTCCACACCCCTTTTT
CCTCTATTTTTCCTAAATCCCCTTTTTCCCTTTCCCTCCACCN
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGTGTCTTTCATATGGGCTAGCTAAAA
TATACAACTCCTTTCATAAGTGTTGAATTACCTATGGATCTTTATGCACA
TCTGTAACATTTTGCCTTAGAGTTCTTTTGATGTATGGCTACATGTGATA
TACCAAGCCATTTGATAGCTCTATGTTCAGACTTTTGTGCAATCTCTCTA
CTCTCTTCCACATTAAATCCCACCAATACTCTTTAGGGTAGGATTTTTAC
CCCTAGCAATCTTGTCAACAATTTTGTACATTTTACTTAATGAAAATCTT
TCTGGCTGGGGAAAGAAAGGATGCAAATGTGGCCTTAATTTGCATGTGCC
AAATAGTCAAAGAGCTTGAGTTTTATAAGCTTATTCACTATTTTAACTTA
TCCCTTTAAACTAACATTTTGGCTGATTTCTTTCTTCTCCATACTGAGTT
GTTCGAAGGTCATTTTTTCCTCTTCTCCCCACATTCTTTCCCCCCCCCTC
TCCTTTTTTATTCCTCCCCTCCCCCACTTCTTTTTTCTTCTTTCTCTTTT
CCTCTCTTCCCTTTTCTTTCTCTCTCCCCCCTAATCCACTTTCTTTCTTT
TCCTCCCCCCCCTTACTTTCCTCTCTCTCTATCTTCTCCCTTTTTTTTTT
TTCCCCCTCTTCTTTTTTTATCCATCTTATTCCTCCTTTAATTTTTTCTT
CC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_j09.g1 MSMg01no370_j09.g1 CHROMAT_FILE:
MSMg01no370_j09.g1 PHD_FILE: MSMg01no370_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:41 2005
         (358 letters)



>mm_chr5_84270433_84271190
          Length = 758

 Score =  658 bits (340), Expect = 0.0
 Identities = 352/356 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgtctttcatatgggctagctaaaatatacaactcctttcataagtgttgaattacct 60
           ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgtcttttatatgggctagcttaaatatacaactcctttcataagtgttgaattacct 260

                                                                       
Query: 61  atggatctttatgcacatctgtaacattttgccttagagttcttttgatgtatggctaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atggatctttatgcacatctgtaacattttgccttagagttcttttgatgtatggctaca 320

                                                                       
Query: 121 tgtgatataccaagccatttgatagctctatgttcagacttttgtgcaatctctctactc 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgatataccaaaccatttgatagctctatgttcagacttttgtgcaatctctctactc 380

                                                                       
Query: 181 tcttccacattaaatcccaccaatactctttagggtaggatttttacccctagcaatctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttccacattaaatcccaccaatactctttagggtaggatttttacccctagcaatctt 440

                                                                       
Query: 241 gtcaacaattttgtacattttacttaatgaaaatctttctggctggggaaagaaaggatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcaacaattttgtacattttacttaatgaaaatctttctggctggggaaagaaaggatg 500

                                                                   
Query: 301 caaatgtggccttaatttgcatgtgccaaatagtcaaagagcttgagttttataag 356
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 caaatgtggccttaatttgcatgtgccaaatagtcaaagagtttgagttttataag 556


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 758
Length adjustment: 9
Effective length of query: 349
Effective length of database: 749
Effective search space:   261401
Effective search space used:   261401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)