BAC Information

Click to search

BAC

Clone NameMSMg01-370M13
Chromosome5 (Build37)
Map Location 42,322,038 - 42,322,405
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC208522, Rab28, Bapx1, A230054D04Rik, LOC384308
Downstream geneLOC100040588, EG636612
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370M13.T7 (MSMg01no370_m13.b1)MSMg01-370M13.TJ (MSMg01no370_m13.g1)
ACCAG477449AG477450
length1,125805
length of high quality
(start - end)
---389 (69 - 457)
definitionCHROMAT_FILE: MSMg01no370_m13.b1 PHD_FILE: MSMg01no370_m13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:56 2005CHROMAT_FILE: MSMg01no370_m13.g1 PHD_FILE: MSMg01no370_m13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCACACAACACGAACCAAACACAATTCTATTAGGCACAGAGGGTTACGGT
GGCAAGTGTCCGCACGCGTTCTGACCACGCGATGTTTTATGATGCGATTG
CAATCGCTACATAGGAGCGAAGTGTTACGCAATTTAATTGTAGGTTGTGG
GGCGGAGCCACGCGCAGTCGTTGAATAGTATAGCGGATACATTGTTCCCA
TGTGTATTTAGACGGTATGTACACGCGCGACGTCTCTATGTGAGTCATCC
GGTCGATCGTATATTCCAGTTACTTACCTGTATCCCTTATTCAGAACTAG
CATAGTGCCATATAACTACGTGCGCCCTATTCAGATCTATCGGCGTACAG
TGATCGCGCAAATATGATCGACTTCTATTCAATACCACCTCTCTTGTTCG
GTCCATATTCGATCCTATTGCACAGGCCACTTCAATACCTTTTTATCTCT
CCACCCAGTGTTTTGTAGAATATAGTATAAGAGAAGAGTTCGTATCACAA
TATGTTGGATAAGATACACATTGTACACAGCCATGCATTCCGCTAAATAT
ACGAGTGCGGATGCACAAAGTAAGTAAAATATAATTTGTACACAACGCTC
AATAATAGGCTAGTATAACAGCTCATGAACATGTATATAGGCAACAAAAA
TACGTAGGTATGTGTGTTGATAGATGACGATAATAGCGCGGGGGAGCTAT
TTCAACAACACTCTTCTGCTTACTATATGTACGAGTGAGTATGGTGTACG
GAACGACGGAGTAAACACACCATATTATATATGATCGGTAGCCTTAGCGT
GTTTAACCACACGATTGTGAATCGCATGATAATATGGACGCTTCCACATT
AACGATACAGCCGCCGACACAAATGTAAATAGCACAAATACCACTCCAGA
CAGCGTGATATTCCATATTAATCTCCACATTATCAAAAACACTCTATTAA
GATGATTACCACGATTGTACCTGTAAACGTATCACCTCATGTATATTCAC
CGGTTCGTGTCTAGCAGTAACGTACGAGCGGAGAGACGCATGGGCGCCTC
AATAAATATAATCGAACCGCAGGTGATATTCCTGACATATCCTCGCGAGA
TATATTACGGGTTCTTGCGCTTATG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTCTTTGTCACACTAAAATACAAACTTTTCTA
TTTTTAGAAGCAAGTGAGTGAATATTTTGAAGTACTACAAATGGTACAGA
ATTATAAATGTCAAAGTTATTGTTCATCACATTGGGGACTAGGTCAGCCT
AAATGTTCATTTTATATTTATGTAAAAACTTCCTGTGTAAATTTTTGCAA
CGCCATGAATCATAGTCACTGTATTAGGGGACTGCTGGCTGACACTCACA
TCAACTTGACATTCTGTGTGTAGGCTCAGAGACTATGTGTCCTGTACTTT
TTCTCCTTGCTCAATGCAAACCATGATAAATCAAACTTTCTTAATATACA
TTCTTATGCACAGCCATACATATATATGTATGTATATATATGTGTGNATA
TATGNATATANANANATANNNNNNNNNNNNNNTTTNTNNNTTTTTTNTNN
TNTTTTTTTTTTTTNNTNTTTTTTNATTTTNTNTTNTTNNATTTNTTTTT
TTTTTTTNTTNNNNNNNTTNNTTTATTTCTANNNNNTTTTTTNTTNTTTT
TNATTTNTTTTTTTTATTTTANTATTNTTTTTTTTTTTTTTTTTATTATT
TTTATTTTTTTNTTTTATTTATTNTTTTTAATTTTTTATTTTAATTTTTT
ATTNTTTTATATATTTTTTTTTTATTTTTTTTTTTAATTTATTATTTATT
TACTNNATTTATTTTTTTTATATTTTTTTNNTTTTTNTTTTTTTTTTATT
TTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_m13.g1 MSMg01no370_m13.g1 CHROMAT_FILE:
MSMg01no370_m13.g1 PHD_FILE: MSMg01no370_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:56 2005
         (389 letters)



>mm_chr5_42321838_42322621
          Length = 784

 Score =  652 bits (337), Expect = 0.0
 Identities = 362/373 (97%), Gaps = 5/373 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctttgtcacactaaaatacaaacttttctatttttagaagcaagtgagtgaatatttt 60
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 201 ttctttgtcacactaaaatacaaatttttctatttttagaagcaagtgagtgaatattgt 260

                                                                       
Query: 61  gaagtactacaaatggtacagaattataaatgtcaaagttattgttcatcacattgggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 gaagtactacaaatggtacagaattataaatgtcaaagttattgttcatcacactgggga 320

                                                                       
Query: 121 ctaggtcagcctaaatgttcattttatatttatgtaaaaacttcctgtgtaaatttttgc 180
           |||||||||||||||||||||||     ||||||||||||||||||||||||||||||||
Sbjct: 321 ctaggtcagcctaaatgttcatt-----tttatgtaaaaacttcctgtgtaaatttttgc 375

                                                                       
Query: 181 aacgccatgaatcatagtcactgtattaggggactgctggctgacactcacatcaacttg 240
           ||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 376 aacgccatggatcatagtcactgtattagaggattgctggctgacactcacatcaacttg 435

                                                                       
Query: 241 acattctgtgtgtaggctcagagactatgtgtcctgtactttttctccttgctcaatgca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 acattctgtgtgtaggctcagagactatgtgtcctgtactttttctccttgctcaatgca 495

                                                                       
Query: 301 aaccatgataaatcaaactttcttaatatacattcttatgcacagccatacatatatatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aaccatgataaatcaaactttcttaatatacattcttatgcacagccatacatatatatg 555

                        
Query: 361 tatgtatatatat 373
           |||||||||||||
Sbjct: 556 tatgtatatatat 568


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 784
Length adjustment: 9
Effective length of query: 380
Effective length of database: 775
Effective search space:   294500
Effective search space used:   294500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)