BAC Information

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BAC

Clone NameMSMg01-371H20
Chromosome5 (Build37)
Map Location 144,208,560 - 144,208,987
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809, Olfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik, Zdhhc4, Grid2ip, Kdelr2, LOC231869
Downstream geneLOC670671, Daglb, Rac1, 2810453I06Rik, Pscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm, Lmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371H20.T7 (MSMg01no371_h20.b1)MSMg01-371H20.TJ (MSMg01no371_h20.g1)
ACCAG477985AG477986
length799761
length of high quality
(start - end)		431 (78 - 508)477 (49 - 525)
definitionCHROMAT_FILE: MSMg01no371_h20.b1 PHD_FILE: MSMg01no371_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:57 2005CHROMAT_FILE: MSMg01no371_h20.g1 PHD_FILE: MSMg01no371_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTATCCCTTTCTCTCTTACATC
ACTTGCATCAAGATATTGTCTCTGTTAATGCTACTTGTGTGGATGTCATT
ACCTTGGGCCAAATGGCTGTATTCTTTAAGGATGTAGGGTCAAAGCTGCT
TGCTCCAACTTGCTTCCCCTGCAAACCTTTTCATGTATACTATTATTCTT
GTTGGAAGCAGAATTGTATTTGTCATAATTTAAGCTATTACATATTAGGG
CTTGGCAGCTCCGCACCAAAGCCCTTCTGTTGGAAGTACTCAGCCTTGAA
CTAAAGAAGGAAGGCAAAGTATGCGTTCTTTCCTCTTTATCAGTAAGAGG
GCTTAGGGACAGCTATCCTCTCTGGCTTCTCTGTTGTGTAACACATCAGG
AACTGGTTTAGAGAACAACATGAGGAAATAATGTTTGTCCTTGAAATCTG
ATGAGCTGGAAAACATCCTTGAAACTGAATTTCAAGAGAAGCCGATGAGC
TATGTCTGTGTTGCAAAATGTACGTTTCGGATTAAGTGGTGACCCACCCT
TTTCCCTTATTCCTATCCCTTGTTTTCTCCTCCTTTTTCTCCATCCTTTT
TACTTCTACTCCCTTTTTCTCCTTTACTTTTTCCTCGTTATCCTTTTTTC
CCCTCTTCCTTTTTTCCCCCCTTTTTCCCTCCTTTCTTACTTCTGCCTTT
CCTTCCTATCCTCTACTCTCATATACTCATCTTTCTATAACAGTTATCG

NTGTTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCAACTGATTTATACCGAATGGCTGAGATGTGCCTTTAAAAA
ATTATTCAACATCCTTAGTCATCAGGGAAATGCAAATCAAAACAACCCTG
AGATTCCACCTCACACCAGTCAGAATAGCTGAGATCAAAAACTCAGATGA
CAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGCT
GGTGGGATTACAAGCTGGTACAACCACTCTGGAAATCAGTTTGGTGGTTC
CTCAGAAAATTGGACATAGGTCTACCTGAGGATCCAGCAATACCTCTCCT
GGGCATATACCCAGAAGATGTTCCAACCGGTAAGAAGGACACATGCTCCA
ATATGTTCATAACAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCC
AGATGTCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACACTTACAC
AATGGAGTACTACTCAGCTATTAAAAACAATGGATTTATGAAATTCGTAG
GCAAATGGATAGATCTGGAGGATATCATCCTGAGTGAGGTAACCCAATCA
TGAAAGACACACATGATATGCACTCACTGAAAAGTGGATATACTGAATTC
TTACAAGTTGGAAATATCAGCTGAAAAAGGGCTTTTCCAGTGGACCAGAA
GCCCTGTGGTTCTTCCCCCACCCCACCGGAAGGTAAAGTGTGAGTGGTGC
CATGTTTCCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_h20.b1 MSMg01no371_h20.b1 CHROMAT_FILE:
MSMg01no371_h20.b1 PHD_FILE: MSMg01no371_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:57 2005
         (431 letters)



>mm_chr5_144208360_144209187
          Length = 828

 Score =  725 bits (375), Expect = 0.0
 Identities = 416/431 (96%), Gaps = 3/431 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttatccctttctctcttacatcacttgcatcaagatattgtctctgttaatgctacttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttatccctttctctcttacatcacttgcatcaagatattgtctctgttaatgctacttg 260

                                                                       
Query: 61  tgtggatgtcattaccttgggccaaatggctgtattctttaaggatgtagggtcaaagct 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtggatgtcattaccttggggcaaatggctgtattctttaaggatgtagggtcaaagct 320

                                                                       
Query: 121 gcttgctccaacttgcttcccctgcaaaccttttcatgtatactattattcttgttggaa 180
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctcactccaacttgcttcccctgcaaaccttttcatgtatactattattcttgttggaa 380

                                                                       
Query: 181 gcagaattgtatttgtcataatttaagctattacatattagggcttggcagctccgcacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 gcagaattgtatttgtcataatttaagctattacatattagggcttggcagctccacacc 440

                                                                       
Query: 241 aaagcccttctgttggaagtactcagccttgaactaaagaaggaaggcaaagtatgcgtt 300
           ||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||
Sbjct: 441 aaagcccttctgttggaagtactcacccttgaactaaagaaggaaggcaaagtatatgtt 500

                                                                       
Query: 301 ctttcctctttatcagtaagagggcttagggacagctatcctctctggcttctctgttgt 360
           ||   |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ct---ctctctatcagtaagagggcttagggacagctatcctctctggcttctctgttgt 557

                                                                       
Query: 361 gtaacacatcaggaactggtttagagaacaacatgaggaaataatgtttgtccttgaaat 420
           |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||  ||
Sbjct: 558 gtaacacatcaggagctggtttagagaacaacgtgaggaaataatgtttgtccttgggat 617

                      
Query: 421 ctgatgagctg 431
           |||||||||||
Sbjct: 618 ctgatgagctg 628


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 828
Length adjustment: 9
Effective length of query: 422
Effective length of database: 819
Effective search space:   345618
Effective search space used:   345618
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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