Query= MSMg01no371_k06.b1 MSMg01no371_k06.b1 CHROMAT_FILE:
MSMg01no371_k06.b1 PHD_FILE: MSMg01no371_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:10 2005
(474 letters)
>mm_chr5_40238510_40239383
Length = 874
Score = 909 bits (470), Expect = 0.0
Identities = 473/474 (99%)
Strand = Plus / Minus
Query: 1 tctagttggcgaagctaaaacatttagcgtcatccttggctctctgctttcactctttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tctagttggcgaagctaaaacatttagcgtcatccttggctctctgctttcactctttca 670
Query: 61 atgtgatcttactgatcttcctcctgtctacatcatatttcacactccttcctctatgtg 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 atgtgatctttctgatcttcctcctgtctacatcatatttcacactccttcctctatgtg 610
Query: 121 ctctaagctatcattcattgcctgtcttcacattattgctataacacctaattaattttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ctctaagctatcattcattgcctgtcttcacattattgctataacacctaattaattttt 550
Query: 181 atttcacacacaaactaaataagtcagtggtaatttttctttgtgtatagaagcaagaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 atttcacacacaaactaaataagtcagtggtaatttttctttgtgtatagaagcaagaat 490
Query: 241 gacagtccaggaaagtaaacctagtcccacagcacaagtgtgtcacaaacctcccaggaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gacagtccaggaaagtaaacctagtcccacagcacaagtgtgtcacaaacctcccaggaa 430
Query: 301 gaaagcaaaatccttaatgcgagatctaaatctctatgtgtactagcctcttcatctctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gaaagcaaaatccttaatgcgagatctaaatctctatgtgtactagcctcttcatctctt 370
Query: 361 tggcctccactgacccctttcactctgccaacatttttttcagttatacagaaacaccaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tggcctccactgacccctttcactctgccaacatttttttcagttatacagaaacaccaa 310
Query: 421 gaatgccattgtctttggagtttactcatgttccctgctctggctctgccagaa 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gaatgccattgtctttggagtttactcatgttccctgctctggctctgccagaa 256
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space: 400896
Effective search space used: 400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no371_k06.g1 MSMg01no371_k06.g1 CHROMAT_FILE:
MSMg01no371_k06.g1 PHD_FILE: MSMg01no371_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:10 2005
(501 letters)
>mm_chr5_40082425_40083323
Length = 899
Score = 907 bits (469), Expect = 0.0
Identities = 488/495 (98%), Gaps = 2/495 (0%)
Strand = Plus / Plus
Query: 7 gaattcttttactgaattacggtatacaataatgaatatggtattcctttggccttggac 66
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcttttactgaattatggtatacaataatgaatatggtattcctttggccttggac 266
Query: 67 agttttatatgagttttctgttactgggaaataaagtttgaaccatacgttcatgacttg 126
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 267 agttttatatgatttttctgttactgggaaataaagtttgaaccatatgttcatgacttg 326
Query: 127 tcaaagaatgccagataagcatctggttatcttgtgattgtgactaactaacatcatgct 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tcaaagaatgccagataagcatctggttatcttgtgattgtgactaactaacatcatgct 386
Query: 187 agttactgtcaccttctctgcctttggagaaatttttttttcaactcaagtgatatgcat 246
|||||||||||||||||||||||||| || | |||||||||||||||||||||||||||
Sbjct: 387 agttactgtcaccttctctgcctttgtagta--ttttttttcaactcaagtgatatgcat 444
Query: 247 ggtaacagcagaaaaaaggtagaagggtttcttattcaactctaagcttgaactaagttc 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggtaacagcagaaaaaaggtagaagggtttcttattcaactctaagcttgaactaagttc 504
Query: 307 tggaatttttacctcttttcttttctgtctatatttttatcttccttcctttctttcttt 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tggaatttttacctcttttcttttctgtctatatttttatcttccttcctttctttcttt 564
Query: 367 tatgtataaactcaacccagtcctaagttttgctgtgaagattttaaataaaataatgaa 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tatgtataaactcaacccagtcctaagttttgctgtgaagattttaaataaaataatgaa 624
Query: 427 cgtggattatgcagaccagtttgtaacatgaagtaattagttaaatatagctttttaggt 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cgtggattatgcagaccagtttgtaacatgaagtaattagttaaatatagctttttaggt 684
Query: 487 ttctgctttcttgta 501
|||||||||||||||
Sbjct: 685 ttctgctttcttgta 699
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 899
Length adjustment: 10
Effective length of query: 491
Effective length of database: 889
Effective search space: 436499
Effective search space used: 436499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
