BAC Information

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BAC

Clone NameMSMg01-371L07
Chromosome5 (Build37)
Map Location 31,289,521 - 31,289,934
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039369, Il6, Tyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23
Downstream geneSlc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371L07.T7 (MSMg01no371_l07.b1)MSMg01-371L07.TJ (MSMg01no371_l07.g1)
ACCAG478146AG478147
length790807
length of high quality
(start - end)		414 (75 - 488)119 (51 - 169)
definitionCHROMAT_FILE: MSMg01no371_l07.b1 PHD_FILE: MSMg01no371_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:15 2005CHROMAT_FILE: MSMg01no371_l07.g1 PHD_FILE: MSMg01no371_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGCATCCTTCTCCCTTCTGTTCCTCT
CAGGATGCTTGTGGACCACAACTGCTTTCTTGATTGACCTGTACTGGGGA
GATCCAGGGCGAGGCCCTGGGAATAAGGACTCACAAGATTTTATTACCAG
TCACAAAATGGATTTGTGCTGCACCCTATGAGTCCCTCAGGAACACACTA
ACTTGGGAGGGAGTCGGCCTTTTTTGTGTCAGTTTGTAAGTAGCAACAGC
AGCCAAGAGGGCATGCTAGGATGGAGGGCAGGGCTGACTGGGACTATCCT
GGCCTGGGAGTGGGTATGAAACTGATGGTGTTGGCAGTCGGGTAGCCATT
CCCTGTGTCCTATTGAAAACTTTCTCACTCAGCTGTCCCCAACACCCACA
TCCTTTTGTTATATATACATTCAATCTGGTGTCTGTGTGTGTGCTTGTGC
ATAAGCACCTGTGTATACATGTGGCAGTGGCCATCCTAGGATAACCCTGT
AGAAGCCTGTTCTCTTCCACCACTATAGGACCCGTGGTCTTGAACACTTA
TTGTCACGTTTGTGCCTTTTTCTCCTTTTCCCTCCGTAGACTTTCCCCCT
TCCCTTTTTCCTCCTTATTTTTGTTTCCCCTTCCCTCCTTTTTTCTCTTT
CTTCTATTCTGCTCACACTCTACCTTCCATAATCCTCCTCTATTCTTTCC
TTCAGGTTATCCTCCCTCACTTTTTTTTTTTTTCCTCTTN

CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTGATCCTTCTACCTTGACCTCCCAAGTATTGGGCTTATGGCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCCTGTCGCTCTCTAGCTCCCAGAGAGAGGG
TCATATGGAAGACAGGGTGGCCGCAAACACTCGGTCAAACGACCTGCCTC
TGTCTCGCAAATACTGAGCCATGAGAGTGCTTCTCTTTAGTCCCGGGAAG
AGACACACAACTCAAGTGCTGAACAGGGACAGAGGAAATGCAGACAGGCA
GGGGAAGAGAGACAAGTGGTAGAGGGTGTCCTAGAATGGATCCCCAGGGG
CAGAGAGGCGCAAATGGCAGGAATAGGTAGGAGGGTCTGACACATAGGAG
GTGCAACGTCATACATCAGTAACATAGGTGAATTAGAGGGAGAGACAATG
TATGAATGAGAATTGGTCTAAGGTATAAAAAGATGATAATCGTATGTTTG
AGAAATGTTGGAGTATGGAAGAACTTAAATGAAAGGCTGTAGAGAAAGGG
GGGGACATAAAAGAATCATATATGAGTTGATATGGAAGTACATCCCGTAG
AGTTGGGCTGGAAATGTTCATCTTTAAAAAAGAACTTAAGGAAATAGGGA
TAAGAAGTTACCATAATCAAGGTGTGGAAAGTGAAAAAATTAATAGACCA
AAAAATATATATTCAGAAAAAACCGAAGACCAAGCGGGCCGTTAACGTTA
TTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_l07.b1 MSMg01no371_l07.b1 CHROMAT_FILE:
MSMg01no371_l07.b1 PHD_FILE: MSMg01no371_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:15 2005
         (414 letters)



>mm_chr5_31289321_31290134
          Length = 814

 Score =  785 bits (406), Expect = 0.0
 Identities = 412/414 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcatccttctcccttctgttcctctcaggatgcttgtggaccacaactgctttcttgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcatccttctcccttctgttcctctcaggatgcttgtggaccacaactgctttcttgat 260

                                                                       
Query: 61  tgacctgtactggggagatccagggcgaggccctgggaataaggactcacaagattttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgacctgtactggggagatccagggcgaggccctgggaataaggactcacaagattttat 320

                                                                       
Query: 121 taccagtcacaaaatggatttgtgctgcaccctatgagtccctcaggaacacactaactt 180
           ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tactagtcacgaaatggatttgtgctgcaccctatgagtccctcaggaacacactaactt 380

                                                                       
Query: 181 gggagggagtcggccttttttgtgtcagtttgtaagtagcaacagcagccaagagggcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggagggagtcggccttttttgtgtcagtttgtaagtagcaacagcagccaagagggcat 440

                                                                       
Query: 241 gctaggatggagggcagggctgactgggactatcctggcctgggagtgggtatgaaactg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctaggatggagggcagggctgactgggactatcctggcctgggagtgggtatgaaactg 500

                                                                       
Query: 301 atggtgttggcagtcgggtagccattccctgtgtcctattgaaaactttctcactcagct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atggtgttggcagtcgggtagccattccctgtgtcctattgaaaactttctcactcagct 560

                                                                 
Query: 361 gtccccaacacccacatccttttgttatatatacattcaatctggtgtctgtgt 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtccccaacacccacatccttttgttatatatacattcaatctggtgtctgtgt 614


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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