BAC Information

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BAC

Clone NameMSMg01-372C13
Chromosome5 (Build37)
Map Location 104,970,230 - 104,970,715
singlet/doubletsinglet
Overlap geneD930016D06Rik
Upstream genePtpn13, Slc10a6, 1700016H13Rik, Aff1, Klhl8, Hsd17b13, EG666629, Hsd17b11, Nudt9, Sparcl1, LOC100041136, Dspp, Dmp1, LOC100041145, Ibsp, Mepe, Spp1, Pkd2, BC005561, LOC100042165, LOC100041172
Downstream gene2310012P17Rik, LOC640963, LOC100041199, LOC666726, C230055K05Rik, LOC100041216, Abcg3, LOC626471, EG545790, 5830443L24Rik, BC057170, Gbp4, LOC675363, LOC626578, Mpa2l, EG634650, Lrrc8b, Lrrc8c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372C13.T7 (MSMg01no372_c13.b1)MSMg01-372C13.TJ (MSMg01no372_c13.g1)
ACCAG478488AG478489
length737747
length of high quality
(start - end)
516 (41 - 556)486 (69 - 554)
definitionCHROMAT_FILE: MSMg01no372_c13.b1 PHD_FILE: MSMg01no372_c13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:50 2005CHROMAT_FILE: MSMg01no372_c13.g1 PHD_FILE: MSMg01no372_c13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAGGATTGCCAGAGCCATACAGAGAAACCCTGTCTCAAAAAAACAAAAAA
AACCCAACCAAACAAAAAGAAGAGCAGGCCATTCCCTGGTGAGGAAATGC
CATCAATAAGATGAAGTATGATCTTGTCCTTATATTAGCTGCTGATCTAT
AACCTGACACACAGCTTCTCAGCTGACATAATTACATCAACAAAGTTTGA
TCCCACAGAACCTCCCCAACTTGTATACCCACCAATCTGAACAATTTCTA
TAAACATGCATGAATTAATAAATGCTGAGGAATTTAAACACTCACTCACT
TTGCCCCCTCCTTCCTAATGGTGACTCCTGATGATGACTCCTTAAACTTT
AGTCTATCAGCTAGCTCTTGTCTACATTGTTTCACCCTACTGTGTACACA
GTAAACTATTCCTCCTGTTCTAGTCTGAAGGCAGAAGACATGTTCCACAT
GAAAGCACTTTTCCTTTCACTGCAAAGGACAGTTAATTACCCGGCGTATA
TGAGTAATTTTCAAAAACACTCTTGTACATACATTTAACATACGGACTTA
AGAAGTTTAATGAAAAAGGGAATCAGGGTCTTTGCCCTGGGAATAAAGAG
ACTGGTATCCATTTGACAACATAGCTTGTCTCATATACATCTTTCTTAAA
GGCTAATGGTGTTACTGCACATAAATTTTCATTGCAC
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGAAATTGAACATGATTGTCAGCACATGAAAG
GTGCCTCAGGGAGAGTGCAGGTGAGTCTAGTGCAGAGGGTCTAATTGGAT
TCCATACCCATCCTAATTGGTTGACCACTGCCCGTTCACGCCCCTCCTCT
CTCAGCGTCCCGAGGCAGCTAGCTGGCTTCTGCATGCAGGGTTTATGTTG
TCAGTACTTCAGTTACAATACAGCTTTCTGTTGTTTGACTCCTTATATGT
AAGTTAAAGGTAATAACTTCTAATTAGTACCCTGATTATTCAAAAGAGAT
AAAGGTATGATAATATACAAAAATATAAAAATTCCAACTTAACAGTGAAA
TGAAAGTAAAAACTTACAATGAGGCTAAAGAATACATTTTGGAAACATAA
ATATGTTTGTAATTAATGGGCTATAATCTAGCCTACCTGGCCCTAAAACT
ATTTTTAAATGTTTATTATTTTTAATAGGGTATACGTGTCTGTGTCTGGA
AGAACAATCAAGTGCTTTTAACTGCTGAGCTCTGGCCCAAAAAATTTTAA
TAATCTAGAGTAACCTGATTTGGAGTATAATTAAATGTGCATGTGAATAA
GAAAAGGTTAGCTGGAGAGAAAGGGAGTTACCTGGTTGGNTTATTTGCTG
GGCTTTGCAATACTAAAATTGCTCTCTGATTCTTTGTAACCTTGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_c13.g1 MSMg01no372_c13.g1 CHROMAT_FILE:
MSMg01no372_c13.g1 PHD_FILE: MSMg01no372_c13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:50 2005
         (486 letters)



>mm_chr5_104970030_104970915
          Length = 886

 Score =  917 bits (474), Expect = 0.0
 Identities = 483/486 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaattgaacatgattgtcagcacatgaaaggtgcctcagggagagtgcaggtgagtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaattgaacatgattgtcagcacatgaaaggtgcctcagggagagtgcaggtgagtct 260

                                                                       
Query: 61  agtgcagagggtctaattggattccatacccatcctaattggttgaccactgcccgttca 120
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtgcagagggcctgattggattccatacccatcctaattggttgaccactgcccgttca 320

                                                                       
Query: 121 cgcccctcctctctcagcgtcccgaggcagctagctggcttctgcatgcagggtttatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgcccctcctctctcagcgtcccgaggcagctagctggcttctgcatgcagggtttatgt 380

                                                                       
Query: 181 tgtcagtacttcagttacaatacagctttctgttgtttgactccttatatgtaagttaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtcagtacttcagttacaatacagctttctgttgtttgactccttatatgtaagttaaa 440

                                                                       
Query: 241 ggtaataacttctaattagtaccctgattattcaaaagagataaaggtatgataatatac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtaataacttctaattagtaccctgattattcaaaagagataaaggtatgataatatac 500

                                                                       
Query: 301 aaaaatataaaaattccaacttaacagtgaaatgaaagtaaaaacttacaatgaggctaa 360
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaagtataaaaattccaacttaacagtgaaatgaaagtaaaaacttacaatgaggctaa 560

                                                                       
Query: 361 agaatacattttggaaacataaatatgtttgtaattaatgggctataatctagcctacct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaatacattttggaaacataaatatgtttgtaattaatgggctataatctagcctacct 620

                                                                       
Query: 421 ggccctaaaactatttttaaatgtttattatttttaatagggtatacgtgtctgtgtctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggccctaaaactatttttaaatgtttattatttttaatagggtatacgtgtctgtgtctg 680

                 
Query: 481 gaagaa 486
           ||||||
Sbjct: 681 gaagaa 686


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space:   416976
Effective search space used:   416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)