BAC Information

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BAC

Clone NameMSMg01-372G13
Chromosome5 (Build37)
Map Location 20,858,471 - 20,859,112
singlet/doubletsinglet
Overlap genenone
Upstream geneMagi2, LOC100041850, Phtf2, LOC622367, Tmem60, Rsbn1l, Ptpn12, EG626903, A530088I07Rik
Downstream geneFgl2, AI847670, Fbxl13, LOC625004, LOC667253, Armc10, AB112350, Pmpcb, Dnajc2, Psmc2, Slc26a5, Reln, Dnaja1-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372G13.T7 (MSMg01no372_g13.b1)MSMg01-372G13.TJ (MSMg01no372_g13.g1)
ACCAG478679AG478680
length736752
length of high quality
(start - end)
641 (65 - 705)242 (70 - 311)
definitionCHROMAT_FILE: MSMg01no372_g13.b1 PHD_FILE: MSMg01no372_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:09 2005CHROMAT_FILE: MSMg01no372_g13.g1 PHD_FILE: MSMg01no372_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
GCAGTTACGTAAGAACATGGGCCTTGAGGTAGAGGGAGCACTGTGGATTA
TCCAAGTGAACCCAGTTTAGTTGCCAGTCTTTGGAAGCAGAGACCTTTTC
CTGGGTAGTTTAGATGGATAAAAAGGAAAGAGGAAGATCAGTTTTGAAAG
CAGGTAGGCCTTACCCCATCACTGTAGGCTTTGAACATGGAGGGAAGGTG
ATCATGAACCAAACCAAGCAGCCAGATACCCTCCCTTAAAGAACATAGTC
TGGGAAGCAACCTGTCTGTGGCCAACTGTGACCCAAGTTGGACTTATGAC
CTTCAGAGTTATAAGATGGTAAAACTGTGTTTAAGCCGCTAAATTTGTAA
TAATTTGTTATGGTAGTAATAAAAAATGAGGGCAGTTACCAAACTGTTGG
ACTCTCCCATCTGTGATTTGCTTTTTCTTCTCTCTTCTTCTCGAAGGAGT
CTTATTATATCCTGGAGTCAAGCTAGGCACATGCCTGTAATCCTAGGACT
TGGAAGGTGGAGACAGAGAGATGGGAGTTCAAGGCCAGCCTCTGTCTCAG
GAAGCCAGTAGCTAAAAAAGTAAAAAAATCAATCCCAGTTCTCACCATCT
ACAGCTCCTTTTATGTGAAACTTCCAGGCAAAATTACTTCTTTCTCTCCG
GTGCTCCTATATGTTCCGACACTCCTATTACTGTAC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCAAAAGAGGAAACTCAAATGGTCGAGAACA
AGGCAATGTTCAACACCCATAGTCATCATGGAAATGCCAATCAAATAGCC
GTGAGATTTCATCTTACAGTTGTTGCTATGGCTAAGATCACAAATGAGGT
CATGCTGGTTAGGATTAGAGTAGGAGGGACACTCATCCACTGCTGATGGA
GCATAAACTTGTACAGCCAGAATGGAAATCAGGGGAGTGGTTCCTCAGAA
AGACGAGATTATTTTTCTCAAGACCGAGCTACACCACTCTTGAACATATA
CCCAAAGGCCACTTCATCCTGCCATAGAAACACTTGTTCAACCATGTTCA
CAGCTGTTCTATTTATTCATAATAATCAGAAACTGGAAACAACCTAGATA
TCCTTCAACAGAAGAATGGATAAAGTACATGTGGTGCATTTTCACAACGG
AGTATTATTTAGCTGTTTAAAGAGAAACACAAGAAATCCACAGGTAAATG
GATGGAACTAGAAAAAAAATCCCAGTGAGATAAGTCAGACCCAGAAAGAC
AAATATGGCATGTATATTCTTACATGTGGATATTTGCTGGTATATTAATG
ACCATGAAGCTATGGCCCATAGAGCCCCAGAGATTAGTTACTATCAGCCA
GGCTGGACAGATAGATCTTGTAGGAAGAGGAACCAGAAAGGTAGCTTGCT
TN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_g13.b1 MSMg01no372_g13.b1 CHROMAT_FILE:
MSMg01no372_g13.b1 PHD_FILE: MSMg01no372_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:09 2005
         (641 letters)



>mm_chr5_20858273_20859312
          Length = 1040

 Score = 1201 bits (621), Expect = 0.0
 Identities = 637/643 (99%), Gaps = 3/643 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatgggccttgaggtagagggagcactgtggattatccaagtgaacccagtttagttgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 acatgggccttgaggtagagggagcactgtggattatccaagtgaacccagtttagttgc 258

                                                                       
Query: 61  cagtctttggaagcagagaccttttcctgggtagtttagatggataaaaaggaaagagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cagtctttggaagcagagaccttttcctgggtagtttagatggataaaaaggaaagagga 318

                                                                       
Query: 121 agatcagttttgaaagcaggtaggccttaccccatcactgtaggctttgaacatggaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 agatcagttttgaaagcaggtaggccttaccccatcactgtaggctttgaacatggaggg 378

                                                                       
Query: 181 aaggtgatcatgaaccaaaccaagcagccagataccctcccttaaagaacatagtctggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aaggtgatcatgaaccaaaccaagcagccagataccctcccttaaagaacatagtctggg 438

                                                                       
Query: 241 aagcaacctgtctgtggccaactgtgacccaagttggacttatgaccttcagagttataa 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aagcaacctgactgtggccaactgtgacccaagttggacttatgaccttcagagttataa 498

                                                                       
Query: 301 gatggtaaaactgtgtttaagccgctaaatttgtaataatttgttatggtagtaataaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gatggtaaaactgtgtttaagccgctaaatttgtaataatttgttatggtagtaataaaa 558

                                                                       
Query: 361 aatgagggcagttaccaaactgttggactctcccatctgtgatttgctttttcttctctc 420
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 559 aatgagggcagttaccaaactgttggactttcccatctgtgatttgctttttcttctctc 618

                                                                       
Query: 421 tt--cttctcgaaggagtcttattatatcctggagtcaagctaggcacatgcctgtaatc 478
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttttcttctcgaaggagtcttattatatcctggagtcaagctaggcacatgcctgtaatc 678

                                                                       
Query: 479 ctaggacttggaaggtggagacagagagatgggagttcaaggccagcctctgtctcagga 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ctaggacttggaaggtggagacagagagatgggagttcaaggccagcctctgtctcagga 738

                                                                       
Query: 539 agccagtagctaaaaaagtaaaaaaatcaatcccagttctcaccatctacagctcctttt 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 agccagtagctaaaaaagtaaaaaaatcaatcccagttctcaccatctacagctcctttt 798

                                                      
Query: 599 atgtgaaacttccaggcaaaattacttctttctctccggtgct 641
           |||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 799 atgtgaaacttccaggcaaaatta-ttctttctctccgttgct 840


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1040
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1030
Effective search space:   649930
Effective search space used:   649930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)