BAC Information

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BAC

Clone NameMSMg01-372I12
Chromosome5 (Build37)
Map Location 44,719,172 - 44,719,596
singlet/doubletsinglet
Overlap geneLOC100040717
Upstream geneC1qtnf7, 4833430A08Rik, 5730509K17Rik, Fbxl5, Bst1, Cd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1, Prom1, LOC100041413, Tapt1
Downstream geneLOC545747, Ldb2, LOC100041481, LOC100040737
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372I12.T7 (MSMg01no372_i12.b1)MSMg01-372I12.TJ (MSMg01no372_i12.g1)
ACCAG478773AG478774
length886763
length of high quality
(start - end)
54 (61 - 114)428 (69 - 496)
definitionCHROMAT_FILE: MSMg01no372_i12.b1 PHD_FILE: MSMg01no372_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:18 2005CHROMAT_FILE: MSMg01no372_i12.g1 PHD_FILE: MSMg01no372_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATTAGCGGCGCTAAACGAATCACAATACGGAGAGGATCCGCGGAATTCA
TTATTGGCCTGTCTTTTCTGTACAGGAAAGTGTGTGTGTGGGTGTGTGTG
TGTGTGTGTGTGTGTGTAGAGTAAAAAAAACACCTATAAATATTGTAGAC
TAATCACAAAGGTGAGGAAAATTTAAACATCAACATAAAACTTCCATCCC
CCACCCCCCCCCACTTTCTCCTTTTCTCTCTCCTCCCCTCCTCCCTTCTA
TTGCATTAAAGAAACACTACCCATAATTTTTTAACAACTTTCCTCTATAC
AATTATACAAACTATTTTCTTTACCAAATCAACAGATATATACACATAAA
AAAATAACAAATAAAATATAAAAATACCACCAATACATAACACATAGATA
AAAATCCGACTAATAAAATACAAACAACACCCACAAACCCTCAACCACTA
GATACCATATACTAATTTATCGCCACTATACACACCATCTATCAATTTAA
ACACTCCTATATAATATAACTTTTAACACTCCCCTACAATTCCCAATACC
TTCCCAATTTACTCACCACCAATATAATCTCCACCTCCTACAACATTTAG
CTCTCTTCTATCTTAACAAATATAACACCCCACAATAATAGACAACAATT
CAAGAAAATTTATAACACCGATCATAAAAGATAAACAACTAAGCATATAA
GAACACACCCCACCTACAAACCAAACCTTTTTTTTGAGACAAGCGGCTAT
ATCCTATTCGACCTCCATTATACAATCCGAATCACCACTATACACCGCAC
ATGTCTTCTGACACCCCTCCAAACTCAACTATATATCTATTAATCTCAAC
ATCTTTTTATATCCCCCTCCCACAACTTACATGCAT
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTAAATCTACTTTTATCACCTGTTTCTGCTCA
AAAGACAAAGAAGAGAAAGAAGAGGAGGAGGTGGGGGAAGAGAAGGAGAA
AAGAAAAAAAGGGAAAGGAAAAGTGTATGAGAGGGAAAAGAGTTTACAGA
ATAAAGAGCAATGTACAGCAGAAATCAAAGTGACTGTGGAGGACTGAGGG
AGTCACTAGATCAAGGGGGAGGGGCAGAGGACATTGAAAGGAGCAAGCCT
GAGACACTTGTTCTTTACTCCAGACATGGGCTGTGCTTTACAACAATCAG
AATTGCCAGAGGATGAGAAGGTGGTCCCACCCAAAACAGCATTTGCTGGA
AACATTTGCTGCATAGATTTGCTGGGAACCGACCTGCACATCTGCTGCAT
ATGTGTCGGGGTGGGGGTTAGGTCCAGCCTGCGTATGCTCTTTGCTTGGT
GATGTATTCCTCTGTATGTCCCGAGTCCTTATGTTACTTGATTCTTGCTG
GCCTCTTTGTGGAGCTTCTATTCCCTTTTGTATCCCTTGTTCCTTTTCCC
TAACTCCTCCATTGGCTGCCCCCGATTTCCCCTCATATTTTGTTCCGTGT
GTTCTCCTTTTTCCTCTTTTCCCTCCCCCTTTTTTGCCCCTCTATCTCAT
TCATACATTTTCCCTTTTTTCCCGCTTTTTTTTCTTTTCTCTCTTTTTTT
CCCTTCCCGTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_i12.g1 MSMg01no372_i12.g1 CHROMAT_FILE:
MSMg01no372_i12.g1 PHD_FILE: MSMg01no372_i12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:18 2005
         (428 letters)



>mm_chr5_44718972_44719798
          Length = 827

 Score =  785 bits (406), Expect = 0.0
 Identities = 421/428 (98%), Gaps = 5/428 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaaatctacttttatcacctgtttctgctcaaaagacaaagaagagaaagaagaggagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaaatctacttttatcacctgtttctgctcaaaagacaaagaagagaaagaagaggagg 260

                                                                       
Query: 61  aggtgggggaagagaaggagaaaagaaaaaaagggaaaggaaaagtgtatgagagggaaa 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtgggggaagggaaggagaaaagaaaaaaagggaaaggaaaagtgtatgagagggaaa 320

                                                                       
Query: 121 agagtttacagaataaagagcaatgtacagcagaaatcaaagtgactgtggaggactgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagtttacagaataaagagcaatgtacagcagaaatcaaagtgactgtggaggactgag 380

                                                                       
Query: 181 ggagtcactagatcaagggggaggggcagaggacattgaaaggagcaagcctgagacact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggagtcactagatcaagggggaggggcagaggacattgaaaggagcaagcctgagacact 440

                                                                       
Query: 241 tgttcttta--ctccagacatgggctgtgctttacaacaatcagaattgccagaggatga 298
           || ||   |  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggtc---agactccagacatgggctgtgctttacaacaatcagaattgccagaggatga 497

                                                                       
Query: 299 gaaggtggtcccacccaaaacagcatttgctggaaacatttgctgcatagatttgctggg 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gaaggtggtcccacccaaaacagcatttgctggaaacatttgctgcatagatttgctggg 557

                                                                       
Query: 359 aaccgacctgcacatctgctgcatatgtgtcggggtgggggttaggtccagcctgcgtat 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aaccgacctgcacatctgctgcatatgtgtcggggtgggggttaggtccagcctgcgtat 617

                   
Query: 419 gctctttg 426
           ||||||||
Sbjct: 618 gctctttg 625


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 827
Length adjustment: 9
Effective length of query: 419
Effective length of database: 818
Effective search space:   342742
Effective search space used:   342742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)