Query= MSMg01no372_j01.b1 MSMg01no372_j01.b1 CHROMAT_FILE:
MSMg01no372_j01.b1 PHD_FILE: MSMg01no372_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:20 2005
(465 letters)
>mm_chr5_117207769_117208633
Length = 865
Score = 839 bits (434), Expect = 0.0
Identities = 458/466 (98%), Gaps = 2/466 (0%)
Strand = Plus / Minus
Query: 1 ataagtcccacagcagcttcctgtgggggaaactgctttctgatgggcttgtatttacgc 60
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 ataagccccgcagcagcttcctgtgggggaaactgctttctgatgggcttgtatttacgc 606
Query: 61 cccc-ccataaagtcccccacacccttcacctccccctgcccctatgattactgcattta 119
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 cccctccataaagtgccccacacccttcacctccccctgcccctatgattactgcattta 546
Query: 120 gtcaactatcgacttgggaaacaattttgttccatttgccatctctgcctgagaaagaga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gtcaactatcgacttgggaaacaattttgttccatttgccatctctgcctgagaaagaga 486
Query: 180 aataaaagaaaggctttgaagtacttttctggcatggtgtttgcattcaagtgttaatgc 239
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 485 aataaaagaaaggctttgaagtac-tttctggcatggtgtttgcattcaagtgttaatgc 427
Query: 240 gatactgagaaaagcggtggacgctaaatgtttacattaaaatggaaatatgggatcgat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gatactgagaaaagcggtggacgctaaatgtttacattaaaatggaaatatgggatcgat 367
Query: 300 tttttttccaacaggggctcctggtcccttttaaaaagtatagttcaagaaaggccgaaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tttttttccaacaggggctcctggtcccttttaaaaagtatagttcaagaaaggccgaaa 307
Query: 360 acaatacaaaacacaaaccaccctctttaagtgatatcggctgaggcagtaacttctggt 419
|||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 306 acaatacaaagcacaaaccaccctctttaagtgatatcagctgaggcagcaacttctggt 247
Query: 420 gagttacagcttgatccaggtaggataattgttttcaaaggctcat 465
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gagttacagcttgatccaggtaggataattgttttcaaaggctcat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space: 389025
Effective search space used: 389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no372_j01.g1 MSMg01no372_j01.g1 CHROMAT_FILE:
MSMg01no372_j01.g1 PHD_FILE: MSMg01no372_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:20 2005
(388 letters)
>mm_chr5_117039243_117040030
Length = 788
Score = 743 bits (384), Expect = 0.0
Identities = 387/388 (99%)
Strand = Plus / Plus
Query: 1 tgacgtaaacttcaaaggtgttcttcggtgcgatagaaaccccaggacgttaaaatatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgacgtaaacttcaaaggtgttcttcggtgcgatagaaaccccaggacgttaaaatatat 260
Query: 61 caagagtgaggaaataccgagggcccatggaactctttaaaagtcacacacagcttaaat 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 caagagtgaggaaataccgagggcccattgaactctttaaaagtcacacacagcttaaat 320
Query: 121 gaaaatgaacaaaagctggaagctaggatgtctctcagttgagtcatatgattgaagcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaaatgaacaaaagctggaagctaggatgtctctcagttgagtcatatgattgaagcta 380
Query: 181 ttggcaagaaaatggtatgctggtaacatcagacagacagacagacaggcagacagacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttggcaagaaaatggtatgctggtaacatcagacagacagacagacaggcagacagacag 440
Query: 241 gcagaaccatgaaggttccaagcatggtaatattagggacagtcgtctaaatgaaaacaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcagaaccatgaaggttccaagcatggtaatattagggacagtcgtctaaatgaaaacaa 500
Query: 301 cagcaagaacctgatttcctgcccatgtgcccataaaatagaagatcatggaccaaacac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagcaagaacctgatttcctgcccatgtgcccataaaatagaagatcatggaccaaacac 560
Query: 361 ttctgccaccagacaaatttcccccggt 388
||||||||||||||||||||||||||||
Sbjct: 561 ttctgccaccagacaaatttcccccggt 588
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space: 295241
Effective search space used: 295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
