BAC Information

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BAC

Clone NameMSMg01-372J20
Chromosome5 (Build37)
Map Location 26,863,444 - 26,863,769
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100038949, EG272714, EG545739, Speer4a, EG664804, LOC619645, LOC100039045, 5031410I06Rik, LOC434689, LOC664837, 4930584F24Rik
Downstream geneDpp6, B930011P16Rik, Speer4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372J20.T7 (MSMg01no372_j20.b1)MSMg01-372J20.TJ (MSMg01no372_j20.g1)
ACCAG478837AG478838
length761783
length of high quality
(start - end)
412 (58 - 469)439 (67 - 505)
definitionCHROMAT_FILE: MSMg01no372_j20.b1 PHD_FILE: MSMg01no372_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:24 2005CHROMAT_FILE: MSMg01no372_j20.g1 PHD_FILE: MSMg01no372_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCA
GTCTGCGTTCTAATCTGAAGCTTTAAAGTAACATAATCCATTCTTGATGG
TTACAGAGATGAGGTCCTTTCTACTAGGTTGCTGGCAGTAGGGGCTTGCT
ACCACTTACCACAAGGCATCCAGCCTTCTTCAAACTAGTGAAAAGGTCAG
CTCAGGCACTTTCGGAAGGTCATGAAACACTCACCCCTCTGGAAGGGAGA
GGCTAATTAGCATTTCTCAGACTACAGGACTTGAACCTGGCCTGTGGGTG
AGGACACATTCCTCAGGACTGACCATTGCTCACCTTCAGACAAGGGAAGT
CCTTGTCACCTCATTTCTTAAAAACCAATCAGTGATCAATATAGTAAAAA
TGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCGTCAAA
ATTCCAACTCAATTCTTCAACGAATTAGAAAGGGCAATCGGCAGATTCAT
CTGGAATAACCAAAAACCTAGGATAGCAAAAACTCTTCTCAAGGATAAAA
GAACCTCTGGGGGAATCACTCTGCCCGATTTAAAGCTGTACTACAGAGTA
ATTTTGATAAAAACTGCATGGGACCGGTATATCACTCTATTAGTAGATCA
ATGGTATCGAATTGTAGACCCCGAGATGAATCTCTCCCCCCTATGGGCCA
TTGAACCTTTGTAAAAGTGAACCAAAATTTTCCTCCCGGATAAAAATATA
GCTTTTTTCCC
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGTGAGAAGGTTATCTATTCAGTAACATCCAAAT
TTACTTCTATTAGAGACAGTGTAATTAATTAGGCATTACAAAGAACGGAG
CCAGAATAGCTCAGGGCTGGTCTGCAGAGTGTTTACTTGAGACAATAGCC
AGTCTTACCCAGACAAGGGAATACACAATGGCCTAGCAAATAGGTGGTTT
TACTGTGAGAGAATTAGGGAATCCCCCTGAGACAGGTTTCTTCACTAGAA
CCCCTGGTGGTGGGTTTAACAATAGACTAGCATTATACCTGGCTCCCTTC
TTAGAGATAAACAGCAGAGCCTGGTCCCCGCCATCTTTTGATGTATACAT
TCCTTATGTTTTGTGTCACTGTAACTCTGGGCAGATGTATCTTGCCTGGT
TTCTTGTTATTCTTCTGTATAAAAAGTTCGATGCTCGACTTGACAAATTA
TATTCAGATTCTACACAACCTCTCGTGTTGATTTGTCTGCCATTCATTTC
GCTGACTCCCTGTCCCCCTGCAACCAGAGACCCGTTCCACATATATTGGC
ACCACCAGGCCTGCGGTTATACATCCTTCCTGGTTGACTATTCCCTGGGG
CCCCTACGGTACGGTTTTTTTTTTTGCACAATAACCTACTTTTGGCCCCT
TTTTTTCTCCCCTGTCTTTCTTTTCTTTTATCCCCCCCCCTCCCTTTTTC
CCCCCTCTTTTATTTACACAACCCCCCCCCACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_j20.b1 MSMg01no372_j20.b1 CHROMAT_FILE:
MSMg01no372_j20.b1 PHD_FILE: MSMg01no372_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:24 2005
         (412 letters)



>mm_chr5_26863244_26864055
          Length = 812

 Score =  538 bits (278), Expect = e-157
 Identities = 314/326 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctaatctgaagctttaaagtaacataatccattcttgatggttacagagatgaggtcc 60
           |||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 201 ttctaatctgaagcttaaaagtaacataatccattcctgatggttacagagataaggtcc 260

                                                                       
Query: 61  tttctactaggttgctggcagtaggggcttgctaccacttaccacaaggcatccagcctt 120
           || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 ttcctactaggttgctggcagtaggggcttgctaccacttaccacaaggcctccagcctt 320

                                                                       
Query: 121 cttcaaactagtgaaaaggtcagctcaggcactttcggaaggtcatgaaacactcacccc 180
           ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 321 cttcaaactagtgaaaaggtcagctcaggaactttgggaaggtcatgaaacactcacccc 380

                                                                       
Query: 181 tctggaagggagaggctaattagcatttctcagactacaggacttgaacctggcctgtgg 240
           |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 tctggaagagagaggctaattagcatttctcagactacagggcttgaacctggcctgtgg 440

                                                                       
Query: 241 gtgaggacacattcctcaggactgaccattgctcaccttcagacaagggaagtccttgtc 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 gtgaggacacattcctcaggactgaccattgctcactttcagacaagggaagtccttgtc 500

                                     
Query: 301 acctcatttcttaaaaaccaatcagt 326
           ||||| |||| |||||||||||||||
Sbjct: 501 acctcctttcctaaaaaccaatcagt 526


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)