BAC Information

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BAC

Clone NameMSMg01-372K02
Chromosome5 (Build37)
Map Location 145,285,848 - 145,286,194
singlet/doubletsinglet
Overlap genenone
Upstream geneRac1, 2810453I06Rik, Pscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm, Lmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1
Downstream gene4930568B11Rik, Nptx2, EG621967, Tmem130, LOC100039427, Trrap, Smurf1, AW146299, EG231885, EG666992, 1700018F24Rik, Arpc1a, Arpc1b, Pdap1, Bud31, Ptcd1, Cpsf4, Atp5j2, Zkscan14, Zkscan5, EG622116, Zfp655, LOC677270, EG666311, EG622127, LOC100039566, Cyp3a16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372K02.T7 (MSMg01no372_k02.b1)MSMg01-372K02.TJ (MSMg01no372_k02.g1)
ACCAG478849AG478850
length775748
length of high quality
(start - end)
249 (66 - 314)434 (71 - 504)
definitionCHROMAT_FILE: MSMg01no372_k02.b1 PHD_FILE: MSMg01no372_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:25 2005CHROMAT_FILE: MSMg01no372_k02.g1 PHD_FILE: MSMg01no372_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACTGTGTTACGAAGATTGGTCTTGATCTCAGGATCCTTCTGTTTAAGTCT
TTCAAGTGCTAGGATTATGACAGGTACCATGAAGGCTGGCAGTTGACACC
CTGACCTTAAATATCCAGTCCCCAGACTTGTGAGAAGTGCGTTTCTAATG
TTTAAGCCTCCCAGTCTTCTGTGTTTTGTTAGAGCAGCCTGTGGTAACTG
AAAAGGAGCACTTCTGGACTGGGGAGAGGGCTTAGTAGGGAAAGTACCCA
TCTTGAGAGTGTAATTTATTAGAGTTCCGGTCCCCAGAATTCATGTTTAT
AATCTCTGGGGGTGTGGGGTTTGAGGGAGTGGAAAAAGGATATCCATGGA
GCTTGCTGGAGGACCAGTCCATCTTGCTTAGCAAAGTCCCAGGTTAATAA
CTAGCCCCTCGCTCCACATTCCGATGGATAGTATTCGCCTACCGATACCC
CAGGCATCGCTTTTCCCATATTCCTCTACTCGCGTGCGTTTCCCCATACT
ATGACGGTCCTCCTCCCCCCTCCTTCCTCCCCTCTTATATCTCTCCGTTC
TCCCTCTGTCTCATCTTTCCCTCCCCCTTTTCTCTCCCTTATTTTTTCCC
CACACATATCCTATTCCCTCTCTTTTTTTTCCTTCTCCTTTTTTTCTCTC
TTGACCTTACACCTATTTCCTTCAATTTCTTTGCTCACATACGCCTTTTT
GTTCCCCATCACTCTTTTTCTTTCT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGAACTGGGGGGTGGCTCACTGGTCAGCC
AGCTAGTCTACTGTAAGCCTATGAGAGACCTTGTCTCAAAACCACCTGAG
GTTGTACACACACACACACACACACACACACACACACACACACACAGAGT
CTTCTACAATACTTTCCCCCTTCCTTCTTCCTTTCCTTCTTTTCTCTTTC
TCTTTCTTTCCTTTTCCCTTCCCCTTCCCTCCTCCTTTCCTTTTCTTTCC
TTCTTTTCTTTCTTGTTCCCCTCCATCCTTCTCTCCCTCCTTTCCCTCTC
CCTCCCTCTTCCCTACCCTTACACACACATATACACAAATACATATCCTG
TCTCTCCCCCTACCCCTAACACAGTAAATCTGGGAACAAATTCCTGTGGG
TGACATTTCCTTCTCTGTAAAATGAAAACTGGTGTGATTGCTAAGGCCCA
CGGGGGATGGTTGCGCTCATAACCTCCGTGAGATATACTGCTCGGCTGAT
CGCTGGTTGCGGCATAAGCAAGATCTGACTGTATTTTCAGACCGAGACGA
AAATCTTTTCCGTTATTGTGTTGCTTGATGTTTTAAAAGTCAATGATTTT
TATATCTCATTACCCCTCCCTTGTTAATAAAATTCGGGTGTGCCCTAAAA
GATAATTTCACTTGAATTCCTAACCTCCGATTAAAACCCCACCCACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_k02.g1 MSMg01no372_k02.g1 CHROMAT_FILE:
MSMg01no372_k02.g1 PHD_FILE: MSMg01no372_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:25 2005
         (434 letters)



>mm_chr5_145285361_145286194
          Length = 834

 Score =  642 bits (332), Expect = 0.0
 Identities = 344/348 (98%), Gaps = 1/348 (0%)
 Strand = Plus / Minus

                                                                       
Query: 87  cacacacacacacacacacacacacacacacacacacacagagtcttctacaatactttc 146
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 834 cacacacacacacacacacacacacacacacacacacacagagtattctacaatactttc 775

                                                                       
Query: 147 ccccttccttcttcctttccttcttttctctttctctttctttccttttcccttcccctt 206
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 774 ccccttccttcttcctttccttcttttctctttctctttctttccttttcccttcccc-t 716

                                                                       
Query: 207 ccctcctcctttccttttctttccttcttttctttcttgttcccctccatccttctctcc 266
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 715 ccctcctcctttccttttctttccttcttttctttcttgctcccctccatccttctctcc 656

                                                                       
Query: 267 ctcctttccctctccctccctcttccctacccttacacacacatatacacaaatacatat 326
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 ctcctttccctctccctccctcttccctacccttacacacacatatacacaaatacatat 596

                                                                       
Query: 327 cctgtctctccccctacccctaacacagtaaatctgggaacaaattcctgtgggtgacat 386
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 cctgtctctccccctacccctaacacagtaaatctgggaacaaattcctgtgggtgacat 536

                                                           
Query: 387 ttccttctctgtaaaatgaaaactggtgtgattgctaaggcccacggg 434
           |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 535 ttccttctctgtaaaatgaaaactggcgtgattgctaaggcccacggg 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space:   350625
Effective search space used:   350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)