BAC Information

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BAC

Clone NameMSMg01-372K18
Chromosome5 (Build37)
Map Location 52,079,203 - 52,079,616
singlet/doubletsinglet
Overlap genenone
Upstream geneEG624734, LOC666265, LOC100041059, Ppargc1a
Downstream geneDhx15, Sod3, Gm447, LOC100041805, Lgi2, LOC545750, D5Ertd135e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372K18.T7 (MSMg01no372_k18.b1)MSMg01-372K18.TJ (MSMg01no372_k18.g1)
ACCAG478881AG478882
length801762
length of high quality
(start - end)
422 (36 - 457)504 (67 - 570)
definitionCHROMAT_FILE: MSMg01no372_k18.b1 PHD_FILE: MSMg01no372_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:28 2005CHROMAT_FILE: MSMg01no372_k18.g1 PHD_FILE: MSMg01no372_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCCAG
TTCTCCATGAAAGACACGGTGTTGAAATGCCCCCCCCCCTAGTTTTGCCA
CAGCCAGCATGGCCTTCCACAGTTTACTTAACAATGTTTCTGAGACAACG
CTAATTTGTGTGGTCCTCCGAGTATGAAGGCCTCTTAGAAACTTGAATTA
TCTGAAGGTTTGGCCTGCAAGTAGGGCTCCTGGTCCCTAGAGAGACTAAT
AGGTCTCTTCTTCCCCTTTCAGACATGTGAGAAACTGCAGAGATTCTCCT
AGCCGGAGGTATGAGTCGTCCATTGCCAGATACATGCCCCCTCCAGAGCA
GCCCTCCTACAGCACTCTGTCTCATGCCAAAAAGTGGTCACTAAGGCTTT
TCAGAGCTGCACTAAGAAATGGACACATCTCATGCTAGCTTTTCGCTTTA
CAACATCCAACGGTGGCCCTTTCTTTCCTCAGGGATTTAGCAGGAGCTGA
CTCCCTGCCAGGTGTTAAGCTATGTATCACAACTCGTTTGTCCAGTCCCT
CCAATTTTTCCCAGGATGGCGGTATCTGGGGACTATGGTCTTTGTAACAT
GGTTACCTCCATTTATTCACTTGGTTTTTTACCGCCTTTAACTGTGCCTT
TTTTTTTACCGCCACGCTATGCGTCACCACCCCTGTTCAATTACTTTGTC
CTTCCTCTTACAAAATACTGCGTTTCCCCCTTTTTACCTTCTATATATTT
TGGCAGTCATTATCTCTTTTTTTTTCCGCCTTCCCCTATACCCTCCTCTT
C
TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAAGGAACTGAATGCCTACCAGGTGGCTCATTGTG
ATGGATATTTTGTGTTTTAGGCATACAACCGAAGTTAATAGCAATTATCA
CAGGAACAGGGTCTTGAGAACTGGTCTGGGTTCAGAAAGAGCTGGATTAA
AAGACAAGTTTTAGCATTTATAAACTTGACAACTTTGGAAAGTTACTTAA
TTTTCCTGTTCCTTAGTTACTTAAAAATAGAGCTAATGGGATTTATCCCA
GACGCTGATTGTGAGAATTAATAAAACAAGAAAACATTTCTCCATGCTTG
CCTGAAGCCAGCATTCAATAAATATGACTTATCAGGATTGCTATGCTTTA
TAGAGTCTAAGATGCAATATATTAAGGAGCATTATTTTACATAGCACTAA
GAGAACATGCTGTCAGTTCAACTCTAATGCACAATCAAGTATGAGGCATC
CTGATATCCAAGATGAGAAAATGGTACATTCTTCCATGATTGAAATATTG
TGTATAGAACTCATTCTGCAACCCATTAGTAATGACAATAAATTATCACA
GCATCTAGAGCAAATAATTGGACAGCCTTTGTCAGGTCCTGAAGAAACTG
AGGACCGGCCCCTTTCTTTATAGGCTCTCCCCACTTATTCTGACCCTTGA
AATCACCACAATTTTCTTAATTAATTCCAGCTGTCCCACAAAAATTTAGT
CAGTCCTTGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_k18.b1 MSMg01no372_k18.b1 CHROMAT_FILE:
MSMg01no372_k18.b1 PHD_FILE: MSMg01no372_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:28 2005
         (422 letters)



>mm_chr5_52078999_52079816
          Length = 818

 Score =  750 bits (388), Expect = 0.0
 Identities = 409/418 (97%), Gaps = 4/418 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctccagttctccatgaaagacacggtgttgaaatgcccccccccctagttttgcc 64
           |||||||||||  | | |||||||||||||||||||||||||||||    ||||||||||
Sbjct: 205 gaattctccaggacactatgaaagacacggtgttgaaatgcccccc----tagttttgcc 260

                                                                       
Query: 65  acagccagcatggccttccacagtttacttaacaatgtttctgagacaacgctaatttgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagccagcatggccttccacagtttacttaacaatgtttctgagacaacgctaatttgt 320

                                                                       
Query: 125 gtggtcctccgagtatgaaggcctcttagaaacttgaattatctgaaggtttggcctgca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtggtcctccgagtatgaaggcctcttagaaacttgaattatctgaaggtttggcctgca 380

                                                                       
Query: 185 agtagggctcctggtccctagagagactaataggtctcttcttcccctttcagacatgtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtagggctcctggtccctagagagactaataggtctcttcttcccctttcagacatgtg 440

                                                                       
Query: 245 agaaactgcagagattctcctagccggaggtatgagtcgtccattgccagatacatgccc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaaactgcagagattctcctagccggaggtatgagtcgtccattgccagatacatgccc 500

                                                                       
Query: 305 cctccagagcagccctcctacagcactctgtctcatgccaaaaagtggtcactaaggctt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctccagagcagccctcctacagcactctgtctcatgccaaaaagtggtcactaaggctt 560

                                                                     
Query: 365 ttcagagctgcactaagaaatggacacatctcatgctagcttttcgctttacaacatc 422
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 561 ttcagagctgcactaagaaatggacacatctcttgctagcttttcgctttacaacatc 618


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 818
Length adjustment: 9
Effective length of query: 413
Effective length of database: 809
Effective search space:   334117
Effective search space used:   334117
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)