Query= MSMg01no372_n16.b1 MSMg01no372_n16.b1 CHROMAT_FILE:
MSMg01no372_n16.b1 PHD_FILE: MSMg01no372_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:42 2005
(464 letters)
>mm_chr5_38467222_38468085
Length = 864
Score = 890 bits (460), Expect = 0.0
Identities = 463/464 (99%)
Strand = Plus / Minus
Query: 1 agcatagtacgctcggggaaggcttacctttcagaaaaacagcttcatttgcacagctgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 agcatagtacgctcggggaaggcttacctttcagaaaaacagcttcatttgcacagctgc 605
Query: 61 ttggccagtgctgcactccgagaacacagtactctgcctggcctgatgaaagggatgttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 ttggccagtgctgcactccgagaacacagtactctgcctggcctgatgaaagggatgttt 545
Query: 121 gcagactcccagctattcactactggcctctacacaaccattcgttacttagtggctaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gcagactcccagctattcactactggcctctacacaaccattcgttacttagtggctaac 485
Query: 181 tcaatttaattattaaaccagaaccaggtaagaagaggaattgggtcaagttacccatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tcaatttaattattaaaccagaaccaggtaagaagaggaattgggtcaagttacccatat 425
Query: 241 aatagaatgttctgggaagcagatttgtgaaaatttccagtcaccaaccaaagcattaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 aatagaatgttctgggaagcagatttgtgaaaatttccagtcaccaaccaaagcattaca 365
Query: 301 agtggcagaatatcaccttccagtcagtggagctaactagtaggaaggcactctcaaaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 agtggcagaatatcaccttccagtcagtggagctaactagtaggaaggcactctcaaaga 305
Query: 361 acaaagcaatgttctttcagtacaggagaatagcttttctaatgtatgtgctcttttgtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 acaaagcaatgttctttcagtacaggagaatagcttttctaatgtatgtgctcttttgtt 245
Query: 421 ctgggtcaaatataatgacttctctgacagactgttccttgtgg 464
|||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 244 ctgggtcaaatacaatgacttctctgacagactgttccttgtgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space: 387716
Effective search space used: 387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no372_n16.g1 MSMg01no372_n16.g1 CHROMAT_FILE:
MSMg01no372_n16.g1 PHD_FILE: MSMg01no372_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:42 2005
(514 letters)
>mm_chr5_38282974_38283891
Length = 918
Score = 909 bits (470), Expect = 0.0
Identities = 503/516 (97%), Gaps = 4/516 (0%)
Strand = Plus / Plus
Query: 1 ggtcaaagacagtattggtggctgcacaccctccttacctaatctgcttcccgcaccctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 201 ggtcaaagacagtattggtggctgcacaccctccttacctaatctgcttcctgcaacctg 260
Query: 61 gcaccctgatttcctcttttcagagctctcaccatgctgctgtctgtctgcctgcagtgt 120
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 gcaccttgatttcctcttttcagagctctcaccatgctgctgcctgtctgcctgcagtgt 320
Query: 121 taactaagcttacttcttctaagaataagcttttccctcaacaacccaactccatgtccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taactaagcttacttcttctaagaataagcttttccctcaacaacccaactccatgtccc 380
Query: 181 tctgaacctccaccctttcagtaagggcttagcaggcagcctatcctgaagcagatgtct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgaacctccaccctttcagtaagggcttagcaggcagcctatcctgaagcagatgtct 440
Query: 241 tgtcctcagtgcaacagccagacaaacaccactgggaagtttggacatcccaagcagcct 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 tgtcctcagtgcaacagccagacaaacaccactgggaagttcggacatcccaagcagcct 500
Query: 301 ggctttgttttgacggaggtgaaactcacagagcataaagctcaccactgcagggtgctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggctttgttttgacggaggtgaaactcacagagcataaagctcaccactgcagggtgctg 560
Query: 361 ccagtcagctccacgaagcccttgcagaagatgaacctcccaagcaagacagcgaccaac 420
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccagtcagctccacgcagcccttgcagaagatgaacctcccaagcaagacagcgaccaac 620
Query: 421 ccgacc----gacccgactgcattcatcagatctgtggtacctgcctgtgggagggtatc 476
|||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 621 ccgacctaccgacccgactgcattcatcagatccgtggtacctgcctgtgggaggccatc 680
Query: 477 ccgatggagcctcttgaggattcttgaggtccaact 512
||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccgatggagcctcttgaggattcttgaggtccaact 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 918
Length adjustment: 10
Effective length of query: 504
Effective length of database: 908
Effective search space: 457632
Effective search space used: 457632
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
