BAC Information

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BAC

Clone NameMSMg01-373C05
Chromosome5 (Build37)
Map Location 46,165,456 - 46,165,720
singlet/doubletsinglet
Overlap geneLcorl
Upstream geneLdb2, LOC100040737, Qdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik, 1600023N17Rik, LOC100041576
Downstream geneEG666103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373C05.T7 (MSMg01no373_c05.b1)MSMg01-373C05.TJ (MSMg01no373_c05.g1)
ACCAG479238AG479239
length667802
length of high quality
(start - end)		271 (17 - 287)530 (149 - 678)
definitionCHROMAT_FILE: MSMg01no373_c05.b1 PHD_FILE: MSMg01no373_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:02 2005CHROMAT_FILE: MSMg01no373_c05.g1 PHD_FILE: MSMg01no373_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCTATATTTAGAGGATCCGCGGAATTCCAAAGTAAACTACATTATGCT
GCATTTGTGTTAATTTTAATTCTTAGTGATACAGGTCTAACATTTAAGTA
TTGTAAACACACCAGCAGAATAACTTTTCTAAATTATTATGTTATAAATC
TTAAAAGAAATAAGATATTATAACATTAGCTTCCTAAAAGCTGTGAAGAA
ATATACTTTTTAAAGATAATACAAATTCTCCAACACTATTTCAGTAACAC
ACAGGGAAAGGCTTTTATTTTATTTTCAATTACTTCAATTGTGGAGGGGG
CTTCTTCCGATNNNAAANNNNNNNNNNAATATAAGGGGGGGGGGCGGGAA
AAACAAAANNNNNNNNNNNNCCGGGNNNCNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNGGNNNNNCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNGNNNNNNNNNNCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNGGGGGGGNCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNGGNNGGGGGGNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGG
GGGGGGGGTGGGGGTTT

GATGGATGAGTAGAGGNATGGGAGGAGATGAGAGAGGGAGGGGGAGAGAA
GGNNNNNGGGCGCGNNNNNNNACTATGAXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTC
ACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACAT
CCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTC
ACACCAGTCAGAATGTCTAAGATCAAAAATTCAGGTGACAGCAGATGCTG
GCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCA
GGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCTCAGAAAATTG
GACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCC
AGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAG
CAGCATTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCA
AGAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTA
CTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGG
ACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAACTCA
CACAATATGTACTCACTGATAAGTGGATATTAGCCCTAAACCTATGATAC
CCAAGATATATGATACCATTTCCTAAACCCTTGAAACTCATGAATAATGG
AT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_c05.b1 MSMg01no373_c05.b1 CHROMAT_FILE:
MSMg01no373_c05.b1 PHD_FILE: MSMg01no373_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:02 2005
         (271 letters)



>mm_chr5_46165249_46165920
          Length = 672

 Score =  482 bits (249), Expect = e-140
 Identities = 261/265 (98%), Gaps = 1/265 (0%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattccaaagtaaactacattatgctgcatttgtgttaattttaattcttagtgataca 67
           |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattccaaagtaaacaaaattatgctgcatttgtgttaattttaattcttagtgataca 267

                                                                       
Query: 68  ggtctaacatttaagtattgtaaacacaccagcagaataacttttctaaattattatgtt 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ggtctaacatttaagtattgtaaacacaccagcagaataacttttctaaattattatgtt 327

                                                                       
Query: 128 ataaatcttaaaagaaa-taagatattataacattagcttcctaaaagctgtgaagaaat 186
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ataaatcttaaaagaaaataagatattataacattagcttcctaaaagctgtgaagaaat 387

                                                                       
Query: 187 atactttttaaagataatacaaattctccaacactatttcagtaacacacagggaaaggc 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 atactttttaaagataatacaaattctccaacactatttcagtaacacacagggaaaggc 447

                                    
Query: 247 ttttattttattttcaattacttca 271
           |||||||||||||| ||||||||||
Sbjct: 448 ttttattttatttttaattacttca 472


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 672
Length adjustment: 9
Effective length of query: 262
Effective length of database: 663
Effective search space:   173706
Effective search space used:   173706
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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