Query= MSMg01no373_g07.b1 MSMg01no373_g07.b1 CHROMAT_FILE:
MSMg01no373_g07.b1 PHD_FILE: MSMg01no373_g07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:20 2005
(609 letters)
>mm_chr5_53979030_53980038
Length = 1009
Score = 1075 bits (556), Expect = 0.0
Identities = 601/642 (93%), Gaps = 40/642 (6%)
Strand = Plus / Minus
Query: 8 gaattcatttacttgcccaagagctgtcagaacccttcttcactctgccacttttcagat 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 gaattcatttacttgcccaagagctgtcagaacccttcttcactctgccacttttcagat 688
Query: 68 tggcgtggtgctgtgtaggactagtgtcttgctagcatcatgcacccacaaatgaagact 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tggcgtggtgctgtgtaggactagtgtcttgctagcatcatgcacccacaaatgaagact 628
Query: 128 gggttttgacatttaaaggacagtgaaccctctaatagctaatgtctcctggttgaaata 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gggttttgacatttaaaggacagtgaaccctctaatagctaatgtctcctggttgaaata 568
Query: 188 aagctttgcttactgaaggtttgttaagggtatgcgatatgtgtttgcctatcgctttat 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 aagctttgcttactgaaggtttgttaagggtatgcgatatgtgtttgcctatcgctttat 508
Query: 248 ttatttacttcccatttttaaaaggacgtatgcccatttaatacgctatgtcaaaacatg 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ttatttacttcccatttttaaaaggacgtatgcccatttaatacgctatgtcaaaacatg 448
Query: 308 tctcatccagaacaagagagtgctgcggaggtaaaatgcctttaaacgtttcctcaagga 367
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 447 tctcatccagaacaagagagtgttgcggaggtaaaatgcctttaaacgtttcctcaagga 388
Query: 368 tttttaggcctagtgtgacggtttgtgacactaatgttggacggaaggccatgagacctt 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tttttaggcctagtgtgacggtttgtgacactaatgttggacggaaggccatgagacctt 328
Query: 428 ggaaagccttgatagtcataaaactaatctcaactcaaacgctccacctaaggtgttttc 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ggaaagccttgatagtcataaaactaatctcaactcaaacgctccacctaaggtgttttc 268
Query: 488 ctttctcagtaatgccaattcctttgccctcacttaagaggaccttggaattacttttgc 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ctttctcagtaatgccaattcctttgccctcacttaagaggaccttggaattacttttgc 208
Query: 548 ----------------------------------------atatatatcacacattcagg 567
||||||||||||||||||||
Sbjct: 207 ttttatatatatatatatatatatatatatatatatatatatatatatcacacattcagg 148
Query: 568 attgcaccggcaagaaaaatcatgctagtcagatctattagt 609
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 attgcaccggcaagaaaaatcatgctagtcagatctattagt 106
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space: 598401
Effective search space used: 598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no373_g07.g1 MSMg01no373_g07.g1 CHROMAT_FILE:
MSMg01no373_g07.g1 PHD_FILE: MSMg01no373_g07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:21 2005
(484 letters)
>mm_chr5_53820225_53821109
Length = 885
Score = 866 bits (448), Expect = 0.0
Identities = 473/486 (97%), Gaps = 9/486 (1%)
Strand = Plus / Plus
Query: 1 attccacaccagtgaggaaatcatctcaaaaaggttgcacatcaggcacaagctcacaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attccacaccagtgaggaaatcatctcaaaaaggttgcacatcaggcacaagctcacaga 260
Query: 61 acaaattccacaatttgaatcaacaccaaatcctgataaaaggatatttcaatgtcatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaaattccacaatttgaatcaacaccaaatcctgataaaaggatatttcaatgtcatga 320
Query: 121 tgttttcttaatgaatgttcttgccttcgtcaaaacaaatgcatccttgctttttgccaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttttcttaatgaatgttcttgccttcgtcaaaacaaatgcatccttgctttttgccaa 380
Query: 181 gaatttttctagcagtgcatgagaaattaaggcataatttcagtaacacccacttaccca 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 gaatttttctagcagtgcatgagaaattaaggcatattttcagtaacacccacttaccca 440
Query: 241 agataacc-----ttttttacctattaggaatgttagtaccaggaagtttccttctaaat 295
|||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agataaccaaagata----acctattaggaatgttagtaccaggaagtttccttctaaat 496
Query: 296 ataaattctctgtgtctacaatccatcccttcgctttcatgacaaatttatgtttttatt 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ataaattctctgtgtctacaatccatcccttcgctttcatgacaaatttatgtttttatt 556
Query: 356 tttgaagcttaatccatataccctccttaaacacaaataataataaatgacatttaaatt 415
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 557 tttgaagcttaatccacataccctccttaaacacaaataataataaatgacacttaaatt 616
Query: 416 aattcaatatcagagtgattgaactaatttttattgttagattattcagtctttccagtt 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aattcaatatcagagtgattgaactaatttttattgttagattattcagtctttccagtt 676
Query: 476 tgaacc 481
||||||
Sbjct: 677 tgaacc 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 885
Length adjustment: 10
Effective length of query: 474
Effective length of database: 875
Effective search space: 414750
Effective search space used: 414750
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
