Query= MSMg01no373_h04.b1 MSMg01no373_h04.b1 CHROMAT_FILE:
MSMg01no373_h04.b1 PHD_FILE: MSMg01no373_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:24 2005
(496 letters)
>mm_chr5_143097094_143097989
Length = 896
Score = 835 bits (432), Expect = 0.0
Identities = 481/508 (94%), Gaps = 18/508 (3%)
Strand = Plus / Plus
Query: 7 ggaattcactctgtttaccaggctagcctcaatcatgtggatgtcagaaggcaacttgct 66
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 189 ggaattcactctgtagaccaggctagcctcaatcatgtggatgtcagaaggcaatttgct 248
Query: 67 ggagtttgttcccttcctctaccatgtgaatactgggaaatgaaccaggggaggcttcta 126
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gttgtttgttcccttcctctaccatgtgaatactgggaaatgaaccaggggaggcttcta 308
Query: 127 agcaagacttcttgctgacccgactcttgtgcactcatgtggggg-g------------- 172
||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct: 309 agcaagacttcttgctgacccgactcttgtgcactcatgtgtgtgtgtgtgtgtgtgtgt 368
Query: 173 ----ggggcagggtaacatgtgccacagcacacctctgaaggtcaaaggacaattttgag 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gtgtggggcagggtaacatgtgccacagcacacctctgaaggtcaaaggacaattttgag 428
Query: 229 gcatcagttccctcctgccacctttacacaggttcaaaggatcaaactcaggcctccagg 288
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 429 gcatcagttccctcctgccacctttacacaggttcaaaggatcaaacttaggcctccagg 488
Query: 289 ctccggtggcaagctcccatacagggtaagccacatcaggaggttggcttggggtttttg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ctccggtggcaagctcccatacagggtaagccacatcaggaggttggcttggggtttttg 548
Query: 349 aatttgggagagctccaggtggaactctggtcaagtgatcaattggctggaacatctgca 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 aatttgggagagctccaggtggaactctggtcaagtgatcaattggctggaacatctgca 608
Query: 409 gctcaagggagtcaaatggttagaaggaaagaaggtgggagccaaaatcatgtggcagcc 468
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 609 gctcaagggagtcaaatggtcagaaggaaagaaggtgggagccaaaatcatgtggcagcc 668
Query: 469 cctcagtaccttcacttgtgtgtgtgtg 496
||||||||||||||||||||||||||||
Sbjct: 669 cctcagtaccttcacttgtgtgtgtgtg 696
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no373_h04.g1 MSMg01no373_h04.g1 CHROMAT_FILE:
MSMg01no373_h04.g1 PHD_FILE: MSMg01no373_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:24 2005
(491 letters)
>mm_chr5_143526333_143527224
Length = 892
Score = 913 bits (472), Expect = 0.0
Identities = 487/492 (98%), Gaps = 2/492 (0%)
Strand = Plus / Minus
Query: 2 caccaacctgaact-ccaagtgtaatgccagaaaccctaggtttgagcccagcctcggag 60
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 867 caccaacctgaactcccaagtgtaatgccagaaaccctaggtttgagctcagcctcggag 808
Query: 61 aaactgcacatggtggtgttcacctgtgatctcagtactcaggaagaagagactggaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 aaactgcacatggtggtgttcacctgtgatctcagtactcaggaagaagagactggaaga 748
Query: 121 ttagacgttgaaggccagcctgggctatatgagacattgtctctgaagcaaaccaagcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 ttagacgttgaaggccagcctgggctatatgagacattgtctctgaagcaaaccaagcag 688
Query: 181 aatagggggcagcaatgggattcaagcatcagcagacagcacccccctcctca-ttgtct 239
||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 687 aatagggggcagcaatgggattcaagcatcagcagacagcattcccctcctcatttgtct 628
Query: 240 ccctctctctcctcccgggaccccttgcagatgtttgctatgaaatcttccttggaggac 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ccctctctctcctcccgggaccccttgcagatgtttgctatgaaatcttccttggaggac 568
Query: 300 atggatgcgctagagctggacttccggatgcggctggcagaggtccagcgaaggtacaaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 atggatgcgctagagctggacttccggatgcggctggcagaggtccagcgaaggtacaaa 508
Query: 360 gagaaacagcgggagttggtcaagctccagagacgccgggactcggggtgagtgtctctc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gagaaacagcgggagttggtcaagctccagagacgccgggactcggggtgagtgtctctc 448
Query: 420 tccccagtttgtgccccatcctggatagctggtccgtaggtcgactttggtagtggtcag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tccccagtttgtgccccatcctggatagctggtccgtaggtcgactttggtagtggtcag 388
Query: 480 gtgtgtgcgtgg 491
||||||||||||
Sbjct: 387 gtgtgtgcgtgg 376
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 892
Length adjustment: 10
Effective length of query: 481
Effective length of database: 882
Effective search space: 424242
Effective search space used: 424242
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
