Query= MSMg01no373_j20.b1 MSMg01no373_j20.b1 CHROMAT_FILE:
MSMg01no373_j20.b1 PHD_FILE: MSMg01no373_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:36 2005
(537 letters)
>mm_chr5_103071813_103072754
Length = 942
Score = 986 bits (510), Expect = 0.0
Identities = 532/542 (98%), Gaps = 5/542 (0%)
Strand = Plus / Plus
Query: 1 ctttgagtctggcttcttccattaaattcaatgtaatcaatcattagtgccaccttttgt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 ctttgagtctggcttcttccattaaattcaatgtaatcaatcattagtgccaccctttgt 260
Query: 61 attgacaagaaaggttggtgtggttgtaccatactttacttatccgctcattggtgaaga 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attgacaagaaaggtcggtgtggttgtaccatactttacttatccgctcattggtgaaga 320
Query: 121 acagttgggttacttattaacaattgttagttaatccgtgtatttttacataacatctct 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acatttgggttacttattaacaattgttagttaatccgtgtatttttacataacatctct 380
Query: 181 agcact-----ttatattctttcccactattgtagctgtcagcctgtacagcaataaacc 235
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcactgtactttatattctttcccactattgtagctgtcagcctgtacagcaataaacc 440
Query: 236 tacagaggccaatagcctatatatcaataaacctttagtggctgacagcctatatatcaa 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacagaggccaatagcctatatatcaataaacctttagtggctgacagcctatatatcaa 500
Query: 296 taaatcttcagtggctgacagcctatattcatcaataaacccatttcttcctcaagttca 355
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 taaatcttcagtggctgacagcctatattcatcaataagcccatttcttcctcaagttca 560
Query: 356 agtttaaagtagattcatgagaaggagttaaaaattattagcatcaaatttcctatctgt 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtttaaagtagattcatgagaaggagttaaaaattattagcatcaaatttcctatctgt 620
Query: 416 aagctgaagcacacaggtagcagtggtagaatcatttttctaggaccactttcgaatgga 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagctgaagcacacaggtagcagtggtagaatcatttttctaggaccactttcgaatgga 680
Query: 476 ggccatgaaaagattaacagaaaccaaggcgtagtggggaaagtgacaggaactaaatgt 535
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 681 ggccatgaaaagattaacagaaaccaaggcgtagtggtgaaagtgacaggaactaaatgt 740
Query: 536 ca 537
||
Sbjct: 741 ca 742
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 942
Length adjustment: 10
Effective length of query: 527
Effective length of database: 932
Effective search space: 491164
Effective search space used: 491164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no373_j20.g1 MSMg01no373_j20.g1 CHROMAT_FILE:
MSMg01no373_j20.g1 PHD_FILE: MSMg01no373_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:36 2005
(496 letters)
>mm_chr5_103247991_103248885
Length = 895
Score = 928 bits (480), Expect = 0.0
Identities = 492/496 (99%), Gaps = 1/496 (0%)
Strand = Plus / Minus
Query: 1 taaagaaattgaatatggaaattatacaaataaactatgggagaaacttatcaagaaaga 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 taaagaaactgaatatggaaattatacaaataaactatgggagaaacttatcaagaaaga 636
Query: 61 caaggagaaaatcaatcatttgaatcaaattcaagagggaaaaacactgtgtcatatcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 caaggagaaaatcaatcatttgaatcaaattcaagagggaaaaacactgtgtcatatcaa 576
Query: 121 agttggtagtgcactcatatggaaatgttttaaattggaagaaaacaatttaggtcatgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 agttggtagtgcactcatatggaaatgttttaaattggaagaaaacaatttaggtcatgt 516
Query: 181 gtggttccctattttccaaaatttaagcaaattttgaattctggactgattaagggggca 240
|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 515 gtggttccctattttccaaaatttaagcaaattttgaaaactggactgattaa-ggggca 457
Query: 241 tgtaccaatttagacatggtggttgggtgccttcagttgtaagactatggagtttcatga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tgtaccaatttagacatggtggttgggtgccttcagttgtaagactatggagtttcatga 397
Query: 301 acttgatcttctgcaggaatctgacctttttgtttatggaaagaaaaacattaataatgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 acttgatcttctgcaggaatctgacctttttgtttatggaaagaaaaacattaataatgt 337
Query: 361 agagtgtgaaccccagtgggcacccatctctaaggacaatgaggatggaggcacatgatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 agagtgtgaaccccagtgggcacccatctctaaggacaatgaggatggaggcacatgatt 277
Query: 421 caggacctgagacttagctttggggcttcttttcatcctgccttccctgcagcttgaaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 caggacctgagacttagctttggggcttcttttcatcctgccttccctgcagcttgaaag 217
Query: 481 tggagggaggcccagc 496
||||||||||||||||
Sbjct: 216 tggagggaggcccagc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 895
Length adjustment: 10
Effective length of query: 486
Effective length of database: 885
Effective search space: 430110
Effective search space used: 430110
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
