Query= MSMg01no373_k08.b1 MSMg01no373_k08.b1 CHROMAT_FILE:
MSMg01no373_k08.b1 PHD_FILE: MSMg01no373_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:39 2005
(532 letters)
>mm_chr5_107510847_107511779
Length = 933
Score = 957 bits (495), Expect = 0.0
Identities = 524/534 (98%), Gaps = 2/534 (0%)
Strand = Plus / Plus
Query: 1 tttacatattttattattacatttattgatgtgcggtttatttatttattatgctgcatt 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 200 tttacatattttattattacatttattgatgtgtggtttatttatttattatgctgcatt 259
Query: 61 tactgacctatt-tatgttatggtgaacatgtagggtcagaggacaacttgtgggagttg 119
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tactgacctattgtatgttatggtgaacatgtagggtcagaggacaacttgtgggagttg 319
Query: 120 tttctctcattcaacaatggtggatctcaggggtgagactcaggtcaccgggcttggcag 179
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 320 tttctctcattcaacaatggtggatctcaggggtgagactcgggtcaccgggcttggcag 379
Query: 180 cgagcatgcttgcttgttgagccatctcacattttggtgcctcccttggctgtttattaa 239
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 caagcatgcttgcttgttgagccatctcacattttggtgcctcccttggctgtttattaa 439
Query: 240 gcaagtattcaagaagtgtcttaatgatggaggtggccgntcaccttgttacagcttcca 299
||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 440 gcaagtactcaagaagtgccttaatgatggaggtggccgttcaccttgttacagcttcca 499
Query: 300 gatctccctgacctgcagagaacccaagatacctgaccctgacctgggctgagcagagtg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gatctccctgacctgcagagaacccaagatacctgaccctgacctgggctgagcagagtg 559
Query: 360 gttctttgatttggtgtatacttctggaaatacacagtttaaggagcagatttctcccga 419
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 560 gtcctttgatttggtgtatacttctggaaatacactgtttaaggagcagatttctcccga 619
Query: 420 gtctccatgta-gaagagttgagagcctacagcatagcaagaccccctagaatcatattg 478
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gtctccatgtaagaagagttgagagcctacagcatagcaagaccccctagaatcatattg 679
Query: 479 gttgctctgctctggagaaatctaccctgagatgttagtaatgttctgccctgg 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gttgctctgctctggagaaatctaccctgagatgttagtaatgttctgccctgg 733
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 933
Length adjustment: 10
Effective length of query: 522
Effective length of database: 923
Effective search space: 481806
Effective search space used: 481806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no373_k08.g1 MSMg01no373_k08.g1 CHROMAT_FILE:
MSMg01no373_k08.g1 PHD_FILE: MSMg01no373_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:39 2005
(343 letters)
>mm_chr5_107645385_107646127
Length = 743
Score = 565 bits (292), Expect = e-165
Identities = 333/356 (93%), Gaps = 17/356 (4%)
Strand = Plus / Minus
Query: 1 gaattcctttataaagttaaaagttcaactaacatcccaagatgccgtgttttggggtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gaattcctttataaagttaaaagttcaactaacatcccaagatgccgtgttttggggtga 348
Query: 61 cagccccagaacctctttagtgtcccctttcctctttctgggcacctgtttatcaatatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 cagccccagaacctctttagtgtcccctttcctctttctgggcacctgtttatcaatatg 288
Query: 121 ggatgtggctggggaggagtggaattatagcttataccactgtagctacccattgctcgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ggatgtggctggggaggagtggaattatagcttataccactgtagctacccattgctcgc 228
Query: 181 ccattagttcccgtgaccagtccctgcaggaaagagggaaggg---ggggagacagag-- 235
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 227 ccattagttcccgtgaccagtccctgcaggaaagagggaagggtggggggagacagaggg 168
Query: 236 --agggag----------ggagagagagattttatttaaatgaatatatgaatatgaacc 283
|||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct: 167 agagggagagagagagagggagagagagagaatacataaatgaatatatgaatatgaacc 108
Query: 284 atcttcatgccaggtaccatatggagttatgagaacctagcaggagtatgagaaaa 339
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 107 atcttcatgccaggtaccatatggagttatgagaacctagcaggcgtatgagaaaa 52
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space: 245156
Effective search space used: 245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
