Query= MSMg01no373_l03.b1 MSMg01no373_l03.b1 CHROMAT_FILE:
MSMg01no373_l03.b1 PHD_FILE: MSMg01no373_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:42 2005
(573 letters)
>mm_chr5_28634035_28635007
Length = 973
Score = 698 bits (361), Expect = 0.0
Identities = 364/365 (99%)
Strand = Plus / Minus
Query: 193 aagagatcagagtgaattaatattatagtggttgagactggctattaacaggttattagc 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aagagatcagagtgaattaatattatagtggttgagactggctattaacaggttattagc 449
Query: 253 agtcataatgtaaatggccttccaataaaaagactgataacaagttgagttattaggaat 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 agtcataatgtaaatggccttccaataaaaagactgataacaagttgagttattaggaat 389
Query: 313 ccatcaacaaagccagttgtggtggcacaagtttataatcccagcattagaaagtgtgag 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ccatcaacaaagccagttgtggtggcacaagtttataatcccagcattagaaagtgtgag 329
Query: 373 gcaggagaatggccatgagcttcaagctagctagggctgtacaataagacttttactaac 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gcaggagaatggccatgagcttcaagctagctagggctgtacaataagacttttactaac 269
Query: 433 aaaaacaacaacaataatattagttaggagccaaagacatagctcagttggtacagtgct 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 aaaaacaacaacaataatattagttaggagccaaagacatagctcagttggtacagtgct 209
Query: 493 tgtcaaagtatgcacaaagccagagtgccacataaatggagggtgctgtgcataactaga 552
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 tgtcaaaatatgcacaaagccagagtgccacataaatggagggtgctgtgcataactaga 149
Query: 553 atctt 557
|||||
Sbjct: 148 atctt 144
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no373_l03.g1 MSMg01no373_l03.g1 CHROMAT_FILE:
MSMg01no373_l03.g1 PHD_FILE: MSMg01no373_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:42 2005
(505 letters)
>mm_chr5_28470650_28471554
Length = 905
Score = 886 bits (458), Expect = 0.0
Identities = 486/502 (96%), Gaps = 12/502 (2%)
Strand = Plus / Plus
Query: 1 aaggcaagcctggtctaaaaaataggttacaagacagccagggttatacagagaaaccct 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 aaggcaagc-----ctaaaaaataggttacaagacagccagggttatacagagaaaccct 267
Query: 61 gtttattaaagataaaaataaaaaataaaaaagaggcctggattctgaggctttgttttt 120
||||||||||||| ||||||||||| |||||||||||||||| ||||||||||
Sbjct: 268 gtttattaaagat-------aaaaataaaaaggaggcctggattctgaagctttgttttc 320
Query: 121 aaaaccatagtaagtcaaggtccctaggccctaggacagtacctagaaggaggtacttat 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaccatagtaagtcaagggccctaggccctaggacagtacctagaaggaggtacttat 380
Query: 181 ttaaagcgctgagctgctgggagctgaaggagattgttactggcctgtttcttccaggcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaaagcgctgagctgctgggagctgaaggagattgttactggcctgtttcttccaggcc 440
Query: 241 ttgggaccatctgacccaaggctcccttttcaccagcatccaaagcctgctctaaggcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgggaccatctgacccaaggctcccttttcaccagcatccaaagcctgctctaaggcct 500
Query: 301 tgctgaaggtggaactcaacctgggacagggcttctgcttactgaatatgaaatccaccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgctgaaggtggaactcaacctgggacagggcttctgcttactgaatatgaaatccaccc 560
Query: 361 ttaaatggtgccaactggctggtgtcaggggagcaggggctagaagggttctggctccca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaaatggtgccaactggctggtgtcaggggagcaggggctagaagggttctggctccca 620
Query: 421 tatggacacatggagctatgcctcctgatcccattagtgctaatcagatcttcatgagag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatggacacatggagctatgcctcctgatcccattagtgctaatcagatcttcatgagag 680
Query: 481 gatctccctctaccctccacag 502
||||||||||||||||||||||
Sbjct: 681 gatctccctctaccctccacag 702
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space: 443025
Effective search space used: 443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
