Query= MSMg01no373_l22.b1 MSMg01no373_l22.b1 CHROMAT_FILE:
MSMg01no373_l22.b1 PHD_FILE: MSMg01no373_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:46 2005
(531 letters)
>mm_chr5_60409489_60410418
Length = 930
Score = 963 bits (498), Expect = 0.0
Identities = 516/522 (98%), Gaps = 1/522 (0%)
Strand = Plus / Plus
Query: 10 gaattccttgacagatcatgtgggcataggttgtgtaaacagggctcaggaggcctaatt 69
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 gaattccttgacagagcatgtgggcataggttgtgtaaacagggctcaggaggcctaatt 269
Query: 70 acttgagttctcactgtagaagttttcttgtatggttgaggctaagctggagaatgcaga 129
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 acttgagctctcactgtagaagttttcttgtatggttgaggctaagctggagaatgcaga 329
Query: 130 cttcttgactttgaggggtagccatgggggtagggatcttaaatcagactgtttccaagc 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 cttcttgactttgaggggtagccatgggggtagggatcttaaatcagactgtttccaagc 389
Query: 190 tctacttgttcatggtgctaggtgctggtactggaaaccaggaacttgcctctcagatgg 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tctacttgttcatggtgctaggtgctggtactggaaaccaggaacttgcctctcagatgg 449
Query: 250 tgtagaaatgccttagctaagaaaactgagggcacaatgtcttataagattctgataaag 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tgtagaaatgccttagctaagaaaactgagggcacaatgtcttataagattctgataaag 509
Query: 310 aaaattgctgggtagaaaaaataatcgtaagccagagaagctatttgtcttctacaatga 369
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 510 aaaattgctgggtagaaaaaataatcgtaagccagagaagctatt-gtcttctacaatga 568
Query: 370 tggaaacaaaacaactcacattattaggaatactgtgtttcttgttttcattaacaaaaa 429
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 569 tggaaacaaaacaactcaccttattaggaatactgtgtttcttgttttcattatcaaaaa 628
Query: 430 tgtttgtttatattcattgatcaatgtactgggttttatgttgaatttatcacacatgga 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tgtttgtttatattcattgatcaatgtactgggttttatgttgaatttatcacacatgga 688
Query: 490 caaaatcctttgatcatatatattcctgaattaccttaactg 531
|||||||||||||||||||||||||||| |||||||||||||
Sbjct: 689 caaaatcctttgatcatatatattcctgcattaccttaactg 730
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 930
Length adjustment: 10
Effective length of query: 521
Effective length of database: 920
Effective search space: 479320
Effective search space used: 479320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no373_l22.g1 MSMg01no373_l22.g1 CHROMAT_FILE:
MSMg01no373_l22.g1 PHD_FILE: MSMg01no373_l22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:46 2005
(505 letters)
>mm_chr5_60542036_60542938
Length = 903
Score = 845 bits (437), Expect = 0.0
Identities = 488/505 (96%), Gaps = 2/505 (0%)
Strand = Plus / Minus
Query: 1 tgaagcaaagtgtacagaagttgagactaggggaaagtaaatatgtctagaatataaaat 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 703 tgaagcaaagtgtacagaagttgagacta-gggaaagtaaatatgtctagaatataaaat 645
Query: 61 taccttgtattcatctaagaatggtacttattgaagaaaatttcagtgaaaatacaaatt 120
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||
Sbjct: 644 taccttgtattcatctaagaatggtatttattgaagaaaatttcagtgagaatacaagtt 585
Query: 121 ctttgtagatttataggaaatgattagtgactacctatgggaagttcgaggcaatgtctg 180
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 584 ctttgtaaatttataggaaatgattagtgactacctatgggaagttagaggcaatgtctg 525
Query: 181 atgtatttaatattatttagcacatatcatatattaatatttttaaacaataactgaagt 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 524 atgtatttaatattatttagca-atatcatatattaatatttttaaacaataactaaagt 466
Query: 241 aatgaaaaatatgaagaaagcccaaggcttaagatatattcagaaatccactgttattta 300
| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 465 agtgaaaaatatgaagaaagcccaagggttaaaatatattcagaaatccactgttattta 406
Query: 301 gaaatttaaatgttttctcaaatgttgtttaacaatattttataggatagaaaccaaatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gaaatttaaatgttttctcaaatgttgtttaacaatattttataggatagaaaccaaatg 346
Query: 361 aaccagaagagttagaatgtttggactctaataatgctagtacaataaacattctaagta 420
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 345 aaccagaagagttagaatgcttggactctaataatgctagtacaataaacattctaacta 286
Query: 421 atgacatttacagcatttaatttccatttctttttatatttgagggactttaatattctc 480
|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 285 ctgacatttacagcatttaattttcatttctttttatatttgagggactttaatgttctc 226
Query: 481 taaaactgaaagaatattttcctcg 505
||||||||| |||||||||||||||
Sbjct: 225 taaaactgacagaatattttcctcg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 903
Length adjustment: 10
Effective length of query: 495
Effective length of database: 893
Effective search space: 442035
Effective search space used: 442035
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
