NTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTCAGGTTTTTCTCTAGCCTAAGCCCTTATCTCTCTTAGCTTT
GGGCCCAGGCCCTTAGGTTTAAGGATAGACCCAGGAGGATATATCTTCTA
GCTTTGGGCCAAAGCCTATTCAGGTTAACTGTTTGGCCCAGACCTACATC
TCTTCTTCCTTTGTACTGAGGATTCCTCCATGTCAGGGTTGTGCCCAGAT
GCACATCTCTCCTAGCTTTAGGTTAAGGCCTGTTCAAGGTTAGTGTTTTG
CCTAGGGCTATATCATCTAAAGATCTTTAGAGTTAGTGTTAGGCCTAGAC
CCACATCTCTTCTAGCTTTGGGCTGAAACCGACTCTGGGTTAGAGTTTGG
CCCAGACAGACATCTCTTCTTCCTTTTTATCCATTCCTATTCAGGTTTAA
GATTTGGCCCAGGCCCACAACTCTCCTAGCATTGGGTGGAGGATTCTTCA
GGGTTAATGTTAGGCCCAGGCCAATCTCTTCTTGATTTGGGCCCAAATTT
CTTTCTTCAGAATTAGGTTTTAGCTTAGGCCCATATCTCTCTTAGCTTAG
GGACCAGTCTTATTTAGATTTAGGATAGAACCAGGCCCACATCTCTTCTT
ACTTTGGACCTAGGCTTCTTCAATTATAAGATAAAGCCCAGGGGCATATC
TCTTCTCTCTTTGTGGGAGGAATCTTTATTGGGTAGGGTAAGGGCCGTCC
CACTTTCTCCCAAATTTGGGCCCAGTCTAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXAGTGAGAAGGTTATCTATTCAGTAACATCCAAATTTACTTCTATT
AGAGACAGTGTAATTAATTAGGCATTACAAAGAACGGAGCCAGAATAGCT
CAGGGCTGGTCTGCAGAGTGTTTACTTGAGACAATAGCCAGTCTTACCCA
GACAAGGGAATACACAATGGCCTAGCAAATAGGTGGTTTTACTGTGAGAG
AATTAGGGAATCCCCCTGAGACAGGTTTCTTCACTAGAACCCCTGGTGGT
GGGTTTATCTATAGACTAGCATTATACCTGGCTCCCTTCTTAGAGATAAA
CAGCAGAGCCTGGTCCCCGCCATCTTTTGATGTATACATTCCTTATGTTT
TGTGTCACTGTAACTCTGGGCAGATGTATCTTGCCTGGTTTCTTGTTATT
CTTCTGTATAAAAAGTTCGATGCTCGACTTGACAAATTATATTCAGATTC
TACACAACCTCTCGTGTTGATCTGTCTGTCATTCATTTCGCTGACTCCTT
GTCCACCTGCAACCTGAGACCCGTTCTACTCAGACAGGGACCAAAAGGGT
CTGCGGCACAGCATCTTCATGGCTGATAATCCTATGTGGCCCATATTTGA
CTGCTTCCTTTCTTGGCCCAATAACCAAGCTCGTTGCCACTTAACCTTTC
TCGGACCACCTCATAAATGAAATGACCATCCTTGTTTTAGTTGCCCTTCG
GTTATTGAGGTCCTN

Query= MSMg01no374_c13.b1 MSMg01no374_c13.b1 CHROMAT_FILE:
MSMg01no374_c13.b1 PHD_FILE: MSMg01no374_c13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:18 2005
         (572 letters)



>mm_chr5_26812508_26813479
          Length = 972

 Score = 1071 bits (554), Expect = 0.0
 Identities = 565/570 (99%), Gaps = 4/570 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctcaggttt--ttctctagcctaagcccttatctctcttagctttgggcccagg 62
           |||||||||||||||  ||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcaggtttagttct--agcctaagcccttatctctcttagctttgggcccagg 262

                                                                       
Query: 63  cccttaggtttaaggatagacccaggaggatatatcttctagctttgggccaaagcctat 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cccttaggtttaaggatagacccaggaggatatatcttctagctttgggccaaagcctat 322

                                                                       
Query: 123 tcaggttaactgtttggcccagacctacatctcttcttcctttgtactgaggattcctcc 182
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 323 tcaggttaactgtttggcccagacccacatctcttcttcctttgtactgaggattcctcc 382

                                                                       
Query: 183 atgtcagggttgtgcccagatgcacatctctcctagctttaggttaaggcctgttcaagg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 atgtcagggttgtgcccagatgcacatctctcctagctttaggttaaggcctgttcaagg 442

                                                                       
Query: 243 ttagtgttttgcctagggctatatcatctaaagatctttagagttagtgttaggcctaga 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttagtgttttgcctagggctatatcatctaaagatctttagagttagtgttaggcctaga 502

                                                                       
Query: 303 cccacatctcttctagctttgggctgaaaccgactctgggttagagtttggcccagacag 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cccacatctcttctagctttgggctgaaaccgactctgggttagagtttggcccagacag 562

                                                                       
Query: 363 acatctcttcttcctttttatccattcctattcaggtttaagatttggcccaggcccaca 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 acatctcttcttcctttttatccattcctattcaggtttaagatttggcccaggcccaca 622

                                                                       
Query: 423 actctcctagcattgggtggaggattcttcagggttaatgttaggcccaggccaatctct 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 actctcctagcattgggtggaggattcttcagggttaatgttaggcccaggccaatctct 682

                                                                       
Query: 483 tcttgatttgggcccaaatttctttcttcagaattaggttttagcttaggcccatatctc 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tcttgatttgggcccaaatttctttcttcagaattaggttttagcttaggcccatatctc 742

                                         
Query: 543 tcttagcttagggaccagtcttatttagat 572
           ||||||||||||||||||||||||||||||
Sbjct: 743 tcttagcttagggaccagtcttatttagat 772


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)