Query= MSMg01no374_c22.b1 MSMg01no374_c22.b1 CHROMAT_FILE:
MSMg01no374_c22.b1 PHD_FILE: MSMg01no374_c22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:20 2005
(450 letters)
>mm_chr5_58420792_58421641
Length = 850
Score = 830 bits (429), Expect = 0.0
Identities = 442/449 (98%), Gaps = 6/449 (1%)
Strand = Plus / Plus
Query: 8 ttctgaacaaaccagagttctaaagtcctgactcctaaaagaacccttgcatataagaag 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttctgaacaaaccagagttctaaagtcctgactcctaaaagaacccttgcatataagaag 267
Query: 68 gaacagtatggtcattgctttcaggtagatttgcttttaaaagtgtagattggaagtact 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gaacagtatggtcattgctttcaggtagatttgcttttaaaagtgtagattggaagtact 327
Query: 128 caaaatctcatataatataaaggtcaacgggttggctttagaaaataaaattcatttact 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 caaaatctcatataatataaaggtcaacgggttggctttagaaaataaaattcatttact 387
Query: 188 actgtgaagatgtggtgatttgttcgtgaaatgtcctcctcagggtcacatgtttgtaaa 247
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 388 actgtgaagatgtggtgatttgtttgtgaaatgtcctcctcagggtcacatgtttgtaaa 447
Query: 248 aagttttaagttctcacttaacactcttctccaaagacaagccaggcttaactatagaag 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aagttttaagttctcacttaacactcttctccaaagacaagccaggcttaactatagaag 507
Query: 308 aaagaaagagaaatggaaggatgaacacacacacacacacacacacacacacacacac-- 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aaagaaagagaaatggaaggatgaacacacacacacacacacacacacacacacacacac 567
Query: 366 --tcaaggaggagggtttttttttttt--aaataactatctaaagaggtggttaagagat 421
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 568 actcaaggaggagggttttttttttttttaaataactatctaaagaggtggttaagagat 627
Query: 422 ggatctaaaagtaccagccaaagcgtaca 450
|||||||||||||||||||||||||||||
Sbjct: 628 ggatctaaaagtaccagccaaagcgtaca 656
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space: 369600
Effective search space used: 369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no374_c22.g1 MSMg01no374_c22.g1 CHROMAT_FILE:
MSMg01no374_c22.g1 PHD_FILE: MSMg01no374_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:20 2005
(446 letters)
>mm_chr5_58591936_58592781
Length = 846
Score = 793 bits (410), Expect = 0.0
Identities = 434/442 (98%)
Strand = Plus / Minus
Query: 1 attgggcaaaaagtttgcctaattttgatatagagattgatggtacttaacgaaggataa 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 attgggcaaaaagtttgcttaattttgatatagagattgatggtacttaacgaaggataa 583
Query: 61 tctcacactcatagacggttaaatattcaaatctttgaggtacttgttccatattgtgat 120
|||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 582 tctcacgctcatagacggttaaatattcaaatctttggggtacttgttacatattgtgat 523
Query: 121 acgccttgaaaactaactgagctcctttcagtaggcattgctatattttttaatgaatca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 acgccttgaaaactaactgagctcctttcagtaggcattgctatattttttaatgaatca 463
Query: 181 catcaataaatttaatagaaattttacatgaattgtgcattttcattatttcattgataa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 catcaataaatttaatagaaattttacatgaattgtgcattttcattatttcattgataa 403
Query: 241 atgtaaaaccttataaaaccaaatactctagcatggatggagttcataaaatgattgatg 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 atgtaaaaccttataaaaacaaatactctagcatggatggagttcataaaatgattgatg 343
Query: 301 actgcttgtataaaatctgtgattttcattaaaaatcatagttttagtgtttattatttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 actgcttgtataaaatctgtgattttcattaaaaatcatagttttagtgtttattatttt 283
Query: 361 ttaagtcaaagatccccctcaatgtgtctaagtttgttcgttctccctgtaaagatttgc 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 282 ttaagtcaaagatccccctcaatgtgtctaagtttgttcgttctcccagtaaagatttgc 223
Query: 421 tatgtacctatcacgtgtcaca 442
||||| ||||||| ||||||||
Sbjct: 222 tatgtgcctatcatgtgtcaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space: 364496
Effective search space used: 364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
