BAC Information

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BAC

Clone NameMSMg01-374E14
Chromosome5 (Build37)
Map Location 69,656,992 - 69,749,525
singlet/doubletdoublet
Overlap geneKctd8
Upstream geneLOC666996
Downstream geneLOC545756, Yipf7, Guf1, Gnpda2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374E14.T7 (MSMg01no374_e14.b1)MSMg01-374E14.TJ (MSMg01no374_e14.g1)
ACCAG480118AG480119
length805763
length of high quality
(start - end)		206 (45 - 250)493 (56 - 548)
definitionCHROMAT_FILE: MSMg01no374_e14.b1 PHD_FILE: MSMg01no374_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:29 2005CHROMAT_FILE: MSMg01no374_e14.g1 PHD_FILE: MSMg01no374_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,656,992 - 69,657,193)(69,749,143 - 69,749,525)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCTATATTGCACAATATACTCTCCAAGACTTAGCCAAACTCTGAT
TCTGATCCTGACAAGTGATCCCCACAGATTACCACAGGGTGATAACAAAA
TAGGCACACTGCCAAGTTTAGGTGCATAAGGAGACCCACTAACCTGATGT
AAAGCAATTCTGGAAAGATTTACAAGGATGTTGGATCCACAGATTTTTAA
NNATCATTTTAGTTTTTTTTAAAAACTTGGNNCAGTACAGAGAAAGGAAG
AAAATTCACCAGTAGGAACTCCTATGTAAGAANNGAAGAAGGAAGGAAGA
ANGAAGGAAGGAAGAAGGAAGGAAGGAGGAAAGAAGGAAGGAAGAAAGAG
GGGGGGAAAAAAAAGGGGAAAGGGGAAAAAAAAAAAAAAACCAAAATTTC
CCCCAGAAAACTTTTTTTAAGGAGGGTGGAGCCCCCCCCAAATTGGGGAA
ATCCCCCTTTTTGGGAAAAAAAAAAAACCCCCCAAGTTTTTTTTCCCCCC
CCCCCCGGGAGGGGACCCCCCCAAAAAAAAAAAAACACCCCCCCTCTTTT
AAAAATTTATTTTCTNNNNTCTTGAAATAAATTTTCTTGGGGAAAAAACC
CCCAAAAAAAAACAGGTTTTTTTTTTGTTGGGGCGGGCCCACCCCCCNNC
NNNNCNNNNATATCAAAATATAATATTAANNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCNN
NNNTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTGTTCCCTCCTCATTTCACTTCTCTCTGAAACTTGTCAGATTCAA
ACTGATTCGTAGATTCAAAGCTATTATTAACTTATCATTACTCTGCAGCT
TCCTCTTTATATGCCAGAAGATTACAGGCCTAGAGAGTTTTTCAATGTGC
TGGCTCTACCAATTTATCTCCACAATAAGAACCCCCCCTAAATAAAAATA
AGAATAAAAAATAAAACTTCCCTGGACTTTTTTTCCCTATAACTTACATA
ACTTCCCCCATTAGAGCATTTTGCACTTTAATCTGAACATGAAACATTTT
TTAGCCTGGTTTATTATTACACACATTTTTTTCCCATGTGATAGTGTATC
CTGGAAAAATCTCAGTACATGGAGATTATCTTTGCACCTTTGTATAGACA
TATCACAGTCTATTGTGCTAATGGGCTACGTTTGTTCAACAACTCCCCAG
ATAATGGAAATTTGGAAAGGAGAAATGAATTANGATACCCCTTCCTGGTA
GTAAATTAAGACAGAGATCCCCTAACTTACGTCCCTCTTATTTGGCTCTT
CCTTTTTCCACTCATCTTAAACTTAATTTCTTGGCCTTTCTTTCCTTTTC
CTTTCCTTTCCTTTCCTTTCCTTTCTTTTCTTTTTAACCCCCCAATTGGT
GGCCCCCCTGGGCCCCTTTTCTAAAAATCCTCTTTCCTTCTCCTCCGGAA
AAAGGAAACCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_e14.b1 MSMg01no374_e14.b1 CHROMAT_FILE:
MSMg01no374_e14.b1 PHD_FILE: MSMg01no374_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:29 2005
         (206 letters)



>mm_chr5_69656788_69657393
          Length = 606

 Score =  375 bits (194), Expect = e-109
 Identities = 200/202 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcctatattgcacaatatactctccaagacttagccaaactctgattctgatcc 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 205 gaattctcctatattgtacaatatactctccaagacttagccaaactctgattctaatcc 264

                                                                       
Query: 65  tgacaagtgatccccacagattaccacagggtgataacaaaataggcacactgccaagtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgacaagtgatccccacagattaccacagggtgataacaaaataggcacactgccaagtt 324

                                                                       
Query: 125 taggtgcataaggagacccactaacctgatgtaaagcaattctggaaagatttacaagga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taggtgcataaggagacccactaacctgatgtaaagcaattctggaaagatttacaagga 384

                                 
Query: 185 tgttggatccacagatttttaa 206
           ||||||||||||||||||||||
Sbjct: 385 tgttggatccacagatttttaa 406


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 206
Length of database: 606
Length adjustment: 8
Effective length of query: 198
Effective length of database: 598
Effective search space:   118404
Effective search space used:   118404
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no374_e14.g1 MSMg01no374_e14.g1 CHROMAT_FILE:
MSMg01no374_e14.g1 PHD_FILE: MSMg01no374_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:29 2005
         (493 letters)



>mm_chr5_69749143_69750035
          Length = 893

 Score =  725 bits (375), Expect = 0.0
 Identities = 381/383 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttccctcctcatttcacttctctctgaaacttgtcagattcaaactgattcgtagatt 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgttccctcctcatttcacttctttctgaaacttgtcagattcaaactgattcgtagatt 324

                                                                       
Query: 61  caaagctattattaacttatcattactctgcagcttcctctttatatgccagaagattac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 caaagctattattaacttatcattactctgcagcttcctctttatatgccagaagattac 264

                                                                       
Query: 121 aggcctagagagtttttcaatgtgctggctctaccaatttatctccacaataagaacccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aggcctagagagtttttcaatgtgctggctctaccaatttatctccacaataagaacccc 204

                                                                       
Query: 181 ccctaaataaaaataagaataaaaaataaaacttccctggactttttttccctataactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ccctaaataaaaataagaataaaaaataaaacttccctggactttttttccctataactt 144

                                                                       
Query: 241 acataacttcccccattagagcattttgcactttaatctgaacatgaaacattttttagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 acataacttcccccattagagcattttgcactttaatctgaacatgaaacattttttagc 84

                                                                       
Query: 301 ctggtttattattacacacatttttttcccatgtgatagtgtatcctggaaaaatctcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83  ctggtttattattacacacatttttttcccatgtgatagtgtatcctggaaaaatctcag 24

                                  
Query: 361 tacatggagattatctttgcacc 383
           ||| |||||||||||||||||||
Sbjct: 23  tacgtggagattatctttgcacc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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