Query= MSMg01no374_f09.b1 MSMg01no374_f09.b1 CHROMAT_FILE:
MSMg01no374_f09.b1 PHD_FILE: MSMg01no374_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:32 2005
(475 letters)
>mm_chr5_117010407_117011280
Length = 874
Score = 847 bits (438), Expect = 0.0
Identities = 462/472 (97%), Gaps = 5/472 (1%)
Strand = Plus / Plus
Query: 4 ggaattcaggccatgtatccttgaggacattatccttgaatctaggcgacagagtggcac 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaggccatg-atccttgaggacattatccttgaatctaggcgacagagtggcac 262
Query: 64 cactctgtctgtgggaaaatggaacacacaggccagggagtgatgttcagtggcttactg 123
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cactctgtctgtggggaaatggaacacacaggccagggagtgatgttcagtggcttactg 322
Query: 124 tgcaacatctctcaagagtgagggagggaagctgggggactgaaatagacagcacaggca 183
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgcaacatctctcaaaagtgagggagggaagctgggggactgaaatagacagcacagg-- 380
Query: 184 gacagacagacagacagacagacagacagctgaatggaaggaaagggagtggggatgatg 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 --cagacagacagacagacagacagacagctgaatggaaggaaagggagtggggatgata 438
Query: 244 tcaaacatgggatcagaaaacccttgaaggcagagggacatcagtgtgaaagagaacaga 303
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 439 tcaaacatgggatcagaaaacccttgaaggcagagggacaccagtgtgaaagagaacaga 498
Query: 304 tccagggagggaaaatggcttcacactgccatgaccctgccaggaggccaacctggttct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tccagggagggaaaatggcttcacactgccatgaccctgccaggaggccaacctggttct 558
Query: 364 tgaccatccatccgctcagtagctacaccatttttagtcacaggagataaatacactaat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 559 tgaccatccatccgctcagtagctacaccatttttagtcacaggagataaatacattaat 618
Query: 424 ctcgaggtcatttaatgacatagctcctgccttcagagaattttattttggt 475
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ctcgaggtcatttaatgacatagctcctgccttcagagaattttattttggt 670
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 874
Length adjustment: 10
Effective length of query: 465
Effective length of database: 864
Effective search space: 401760
Effective search space used: 401760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no374_f09.g1 MSMg01no374_f09.g1 CHROMAT_FILE:
MSMg01no374_f09.g1 PHD_FILE: MSMg01no374_f09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:33 2005
(402 letters)
>mm_chr5_117180619_117181420
Length = 802
Score = 770 bits (398), Expect = 0.0
Identities = 401/402 (99%)
Strand = Plus / Minus
Query: 1 ttcttcgatcatctgctgtgtaaatcactgactacggagagttaatcatgtataggaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ttcttcgatcatctgctgtgtaaatcactgactacggagagttaatcatgtataggaaat 360
Query: 61 ggttcctttctctgggttaatgagcataacactcctaacagaatctgtttgctcgatcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ggttcctttctctgggttaatgagcataacactcctaacagaatctgtttgctcgatcta 300
Query: 121 ctttcagatcttaggcagtttgctcaattaattgtctccaataatttctctttgttttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ctttcagatcttaggcagtttgctcaattaattgtctccaataatttctctttgttttct 240
Query: 181 ggcaatactttctgttctcccataaacacatatactcattgtgatggtttgtatatgctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ggcaatactttctgttctcccataaacacatatactcattgtgatggtttgtatatgctt 180
Query: 241 ggctcagggagcagcactattaggaggtgtggccttcttggagtagatgtgtcactgtgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 ggctcagggagcagcactattaggaggtgtggccttcttggagtagatgtgtcactgtgg 120
Query: 301 gcatggtctttagaccctcatcctagctgactggaagtcagcattctgctagcagtcttc 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 119 gcatggtctttagaccctcatcctagctgactggaagtcagtattctgctagcagtcttc 60
Query: 361 aagtgaagatgtagtaatctcagctcctatagcaccatgcct 402
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 aagtgaagatgtagtaatctcagctcctatagcaccatgcct 18
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space: 311649
Effective search space used: 311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
