BAC Information

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BAC

Clone NameMSMg01-374J23
Chromosome5 (Build37)
Map Location 14,598,443 - 14,598,866
singlet/doubletsinglet
Overlap genePclo
Upstream geneSema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957
Downstream geneENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374J23.T7 (MSMg01no374_j23.b1)MSMg01-374J23.TJ (MSMg01no374_j23.g1)
ACCAG480374AG480375
length770756
length of high quality
(start - end)
427 (54 - 480)423 (72 - 494)
definitionCHROMAT_FILE: MSMg01no374_j23.b1 PHD_FILE: MSMg01no374_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:55 2005CHROMAT_FILE: MSMg01no374_j23.g1 PHD_FILE: MSMg01no374_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCATCTGGGGACTTACAGAATTTCAAATTTCATCTTTAT
GCACAGGGATATTCAGCTTCTCTACGGCCATTTCCGTTATCAGATTGAGG
CTAAGTCCCTATGGTCCTACTTTCCTGAGGGTTTTTTTTTTCTTTAAATA
CTCTTGAGGTTTTTTTTTTTTTCTTTAAATGCTCTTGAGTGTTTCAAGAA
TATAACTTTATATTTCTCTAGTTATATTTTATTTTTATATTATATGATAG
ATTACATTAAATTTTAGTATTTTGATGATGATACTTAGAATAAGACATTG
TTGGATATGGCATATGATGCTTTTTAATTCAATTTTGTTGAATTTAATCT
GGTAATTTTTCTAGGAACTCATTTTGTTTAGTCATTCTAGGGAAGTTTAT
AACTCATCAAGATACAATTGATAAAGAGTGTGTATGTGTGAAATTAAAGT
ATGTCACCTGAAGCTAAGAAATGGCCTCNTGTATATTAATAATATTACCA
TAATAGTAATGATAGCTTATGCTGTTGAGCTATTTATTCCGAACATGCTG
TAAGTAGCTTGAGAAAATTTACTCTTTAAAAAGAGGGATTGTTATTTTTC
TAGATCCTTATTGAAATTTTATAAATGCCCATAAAGGGGAAGACTACCAG
TTTTTTAAAATTCCCCCAAGTTGGGTTTTCCATTCCAAACAACCCCCTTC
CAAAGGCATTTTTTTTCCCA
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGAAACTCAACAGCAAAACAAAAACAAA
AAACAAGAAAACCAACACCAACCAATTTAGAAATGGGAAAGGCGGGGCAG
AGGAGATGCTCAGTCAATGCTTGTGCTGCAAGCAAGCCTGAGGTCCAGAG
TTCCATCCTTAGAACACATGTGGCAATGCTGGCATTGGGGCCCAGAATAT
GTCTGTGGTCCCCTGATAGGAAAGAGCGGAAAGAGGATCACTTATCAGCT
AGTCTAGTAGCTGGGAGCTCCAAGCATGAGATGCATGGCTGGAGGTAACA
TCTGAGCTTGTCCATGGCCTGTACATGGATGTGCACACATATGCATATAT
ACTTGCATGCACACACACACACACACACACACATTTCAAAAAAGAAATGC
CGGGTGTTGGTGGCACACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGC
AGCCAGATTTCTGAGTTTGAGGCCGCCTGGTCTAAAATTGGGTTCCAGGA
CAGGCTGAGGTCAATCCCAACAACAACGGGGGATTCCCCCCTCTGGGGAA
TCCCAACTGAAACCTCCTCTGGGGTTCTTAAAAAAGTTACGGTGGCTTTT
ATTATATTTTTTAAATATTTCTTTTTAAATAACAAATCTATTTTTCTTCC
TCACTTATCTTCTTCTCTACCGGGTTGTTTCTTTTTGTTTCTCCCTCTTT
TGGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_j23.b1 MSMg01no374_j23.b1 CHROMAT_FILE:
MSMg01no374_j23.b1 PHD_FILE: MSMg01no374_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:55 2005
         (427 letters)



>mm_chr5_14598240_14599066
          Length = 827

 Score =  797 bits (412), Expect = 0.0
 Identities = 421/424 (99%), Gaps = 1/424 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatctggggacttacagaatttcaaatttcatctttatgcacagggatattcagc 64
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 204 gaattcatctggggacttacagaatttcaaacttcatctttatgcacagggatattcagc 263

                                                                       
Query: 65  ttctctacggccatttccgttatcagattgaggctaagtccctatggtcctactttcctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttctctacggccatttccgttatcagattgaggctaagtccctatggtcctactttcctg 323

                                                                       
Query: 125 agggttttttttttctttaaatactcttgaggttttttttttttt-ctttaaatgctctt 183
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 324 agggttttttttttctttaaatactcttgaggttttttttttttttctttaaatgctctt 383

                                                                       
Query: 184 gagtgtttcaagaatataactttatatttctctagttatattttatttttatattatatg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gagtgtttcaagaatataactttatatttctctagttatattttatttttatattatatg 443

                                                                       
Query: 244 atagattacattaaattttagtattttgatgatgatacttagaataagacattgttggat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 444 atagattacattaaattttagtattttgatgatgatacttagaataagacattcttggat 503

                                                                       
Query: 304 atggcatatgatgctttttaattcaattttgttgaatttaatctggtaatttttctagga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atggcatatgatgctttttaattcaattttgttgaatttaatctggtaatttttctagga 563

                                                                       
Query: 364 actcattttgtttagtcattctagggaagtttataactcatcaagatacaattgataaag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 actcattttgtttagtcattctagggaagtttataactcatcaagatacaattgataaag 623

               
Query: 424 agtg 427
           ||||
Sbjct: 624 agtg 627


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space:   341924
Effective search space used:   341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)