BAC Information

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BAC

Clone NameMSMg01-374L21
Chromosome5 (Build37)
Map Location 38,227,148 - 38,430,368
singlet/doubletdoublet
Overlap genenone
Upstream genePpp2r2c, Wfs1, Jakmip1, EG330070, Gm1043, LOC100040936, Crmp1, Evc, Evc2, LOC100040355, LOC100040988, Stk32b, Cytl1, Msx1
Downstream geneStx18, Nsg1, LOC100040397, Zfp509, Lyar, Tmem128, Otop1, Drd5, 4930487D11Rik, Slc2a9, Wdr1, 4930421P07Rik, 6820424L24Rik, Clnk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374L21.T7 (MSMg01no374_l21.b1)MSMg01-374L21.TJ (MSMg01no374_l21.g1)
ACCAG480464AG480465
length783760
length of high quality
(start - end)		420 (74 - 493)431 (56 - 486)
definitionCHROMAT_FILE: MSMg01no374_l21.b1 PHD_FILE: MSMg01no374_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:05 2005CHROMAT_FILE: MSMg01no374_l21.g1 PHD_FILE: MSMg01no374_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,227,148 - 38,227,566)(38,429,938 - 38,430,368)
sequence
CCCTTCTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGTTCAGAG
GATCCGCGGAATTCCAAATGATTTCCCTCCCCCTCTCCTTTCCCTAAAGG
TCAGGGTGGCAGGCAGGATAAGGCAGAGGCGGGGCAGGTGGGCCTGTCCG
GACCCTGCTGACTCATGGGAGTGTTAATGCCACTGCAGTCCGTTGTTGCC
GTTGCCAGGGAGCTGATTAAGATGTCACGGAAGATTATGATGTCAGGTGC
AGGAGTCAAGCTCCAGGGGGGTGACTGCTAGGCTGGGAAGGTTACCCTGG
CAACAGAGACAGGACATCCATGCCGAGTAGGGACATAGTCTAGTAGGAGG
GGCAGGGGGTCCAGGATGATTGTCCTGGGTACCAAAATCTGGCCTTTCTG
CTCCACAGCTGGGTGGGTGAGCTTGGGGGGAAAGTCTTCCATCTTGAATA
TCTTCTCTTTCTCCCAAAATGGGAGAACAATCCCATCTCTGTGAGAATTG
AATGGGATTGAAAAAAAAAATCCCCTCCCTCTCCCCAGCTTTCTAGAGGC
TGTCAAGTCCCCAGGGATCCCTAGCCAGGAGGAAGTCCCAAGCCCGAGGT
TCAGGTTGGGGNGGGTTTGCCCCCAAAGGGTAAAAAGGGCCCGCTCACTT
TGTGCCGGTTCCCTGGGTCCCACTGGAACCCTTTTTGTTGGCGGCCTATA
TTCTCAATTTTAGAAAAGGGAGGGGCTTCTCCCCTGTTTTTTTTTGTCCA
TATTTATCGCCTCACTCCCTCCATTTGTGCTAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCCGTTCCAGACAGCTACCCGCAGTGCATCGGCACCCCTTTCTCC
TCTCTGCAAAACTCAGCGGGATCAGACGCTCGGAGATTTCCCAGTCTGGA
CTTCAGGAACGAAAGCATCGGGAAGCTAGAAAGATCGCTCCCCTTATGAT
TCTTTAGGAGACGGGCGGGCGGTTTGGTTGACAGGTGGGGAGTGTCACAC
TTTTGACTTTTGTCATCAAGGGATCGCCTTGAGTAACAATGAACTATGAC
CATCTGAGTTGCAGGAGCTAGGAAAGGGTACGTGTACAGAGGTAGGGGCC
AGAGACCTTTTTTCTTCAACCTTCAGCCAGTTCGGTAAAGTGAAGCCAGC
GCCTTTCTTGGAATGCACAGAGAATTAAACAGAATGTGTGTATAAAACGT
CCTCGTGCTGTTTAACTCTTAGTATACAGCTAGTAGATGTTGCCGTTGTT
GATAATATGGGTTGCCTCAGCCGTTTTGTTTGGTTTGTTTTCCAAGAAGG
GTTTTCTTGTGGAGACTTGAAGGTCCTGGAATTCACTCCAGCATACTGGC
TGGGCCTCTAAATTAAAATCCTCTCTCCCCCTGCCCCCCCCGGGTGGTGA
ATAAGGGTTCTGTCTCCTATTCCCTTCTTTTTGTTTTTTTATTTGGTGAT
ATTGGTTACTTCTTTTTCTCCTGTTGTTTTTCTTTGTCATTCATTTTTTT
TTTTCTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_l21.b1 MSMg01no374_l21.b1 CHROMAT_FILE:
MSMg01no374_l21.b1 PHD_FILE: MSMg01no374_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:05 2005
         (420 letters)



>mm_chr5_38226947_38227766
          Length = 820

 Score =  795 bits (411), Expect = 0.0
 Identities = 417/419 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   ccctccccctctcctttccctaaaggtcagggtggcaggcaggataaggcagaggcgggg 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ccctccccctctcctttccctaaaggtcagggtggcaggcaggataaggcagaggcgggg 261

                                                                       
Query: 62  caggtgggcctgtccggaccctgctgactcatgggagtgttaatgccactgcagtccgtt 121
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 262 caggtgggcctgtccagaccctgctgactcatgggagtgttaatgccactgcagaccgtt 321

                                                                       
Query: 122 gttgccgttgccagggagctgattaagatgtcacggaagattatgatgtcaggtgcagga 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gttgccgttgccagggagctgattaagatgtcacggaagattatgatgtcaggtgcagga 381

                                                                       
Query: 182 gtcaagctccaggggggtgactgctaggctgggaaggttaccctggcaacagagacagga 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gtcaagctccaggggggtgactgctaggctgggaaggttaccctggcaacagagacagga 441

                                                                       
Query: 242 catccatgccgagtagggacatagtctagtaggaggggcagggggtccaggatgattgtc 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 catccatgccgagtagggacatagtctagtaggaggggcagggggtccaggatgattgtc 501

                                                                       
Query: 302 ctgggtaccaaaatctggcctttctgctccacagctgggtgggtgagcttggggggaaag 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ctgggtaccaaaatctggcctttctgctccacagctgggtgggtgagcttggggggaaag 561

                                                                      
Query: 362 tcttccatcttgaatatcttctctttctcccaaaatgggagaacaatcccatctctgtg 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tcttccatcttgaatatcttctctttctcccaaaatgggagaacaatcccatctctgtg 620


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no374_l21.g1 MSMg01no374_l21.g1 CHROMAT_FILE:
MSMg01no374_l21.g1 PHD_FILE: MSMg01no374_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:05 2005
         (431 letters)



>mm_chr5_38429738_38430568
          Length = 831

 Score =  826 bits (427), Expect = 0.0
 Identities = 430/431 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccgttccagacagctacccgcagtgcatcggcacccctttctcctctctgcaaaactca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tccgttccagacagctacccgcagtgcatcggcacccctttctcctctctgcaaaactca 572

                                                                       
Query: 61  gcgggatcagacgctcggagatttcccagtctggacttcaggaacgaaagcatcgggaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 gcgggatcagacgctcggagatttcccagtctggacttcaggaacgaaagcatcgggaag 512

                                                                       
Query: 121 ctagaaagatcgctccccttatgattctttaggagacgggcgggcggtttggttgacagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ctagaaagatcgctccccttatgattctttaggagacgggcgggcggtttggttgacagg 452

                                                                       
Query: 181 tggggagtgtcacacttttgacttttgtcatcaagggatcgccttgagtaacaatgaact 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tggggagtatcacacttttgacttttgtcatcaagggatcgccttgagtaacaatgaact 392

                                                                       
Query: 241 atgaccatctgagttgcaggagctaggaaagggtacgtgtacagaggtaggggccagaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 atgaccatctgagttgcaggagctaggaaagggtacgtgtacagaggtaggggccagaga 332

                                                                       
Query: 301 ccttttttcttcaaccttcagccagttcggtaaagtgaagccagcgcctttcttggaatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ccttttttcttcaaccttcagccagttcggtaaagtgaagccagcgcctttcttggaatg 272

                                                                       
Query: 361 cacagagaattaaacagaatgtgtgtataaaacgtcctcgtgctgtttaactcttagtat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 cacagagaattaaacagaatgtgtgtataaaacgtcctcgtgctgtttaactcttagtat 212

                      
Query: 421 acagctagtag 431
           |||||||||||
Sbjct: 211 acagctagtag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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