Query= MSMg01no374_n10.b1 MSMg01no374_n10.b1 CHROMAT_FILE:
MSMg01no374_n10.b1 PHD_FILE: MSMg01no374_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:12 2005
(552 letters)
>mm_chr5_33249182_33250133
Length = 952
Score = 893 bits (462), Expect = 0.0
Identities = 508/524 (96%), Gaps = 4/524 (0%)
Strand = Plus / Minus
Query: 1 gagaaggaaaggctgctagccagtgtgggacttgtgtcctggaaagacttcccacagttt 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gagaaggaaaggctgctagccggtgtgggacttgtgtcctggaaagacttcccacagttt 464
Query: 61 taacaatctgtgaagccatcctatcgaacagcctacagtcaaggatggctcagaggtggg 120
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 463 taacaatctgtgaagccatcctataggacagcctacagtcaaggatggctcagaggtggg 404
Query: 121 tgggacgacatcttg-accagccctgtttagatgtgcatacccttggtcttctattttaa 179
|||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 403 tgggacaacatcttgaaccagccctgtttagatgtgcatacccttggtcttcta-tttaa 345
Query: 180 gttctgatttcattttaggatcctaaactcagagttgaggggttttctggatctctttgc 239
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 344 gttctgatttcattttaggaccctaaactcagagttgaggggttttctggatctctttgc 285
Query: 240 ccatcttcctattgttgccacattgaatcaatctttttctgctttctaattttatttttc 299
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ccatcttcctaatgctgccacattgaatcaatctttttctgctttctaattttatttttc 225
Query: 300 cttagagttaaagaccacagaacagggctggagagatggttcagggcttaagagtactga 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 224 cttagagttaaagaccacagaacagggctggagagatggttcagggcttaagagcactga 165
Query: 360 ctattcttccagggaaccaggtttggttcctagcttccacatgattgctcataatctgaa 419
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 164 ctattcttccagggaaccaggtttgattcctagcttccacatggttgctcataatctgaa 105
Query: 420 actccagttgcagggcactcaactccctcttctgacctttgaagacacgaagcaagcatg 479
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 104 actccagttgcagggcactcaactcccgcttctgacctttgaagacacgaagcaagcacg 45
Query: 480 tggtgtataaagttttagattttctttat--gtttttacttttt 521
||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 44 tggtgtataaagttttagattttctttatatgtttttacttttt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space: 510564
Effective search space used: 510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no374_n10.g1 MSMg01no374_n10.g1 CHROMAT_FILE:
MSMg01no374_n10.g1 PHD_FILE: MSMg01no374_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:12 2005
(523 letters)
>mm_chr5_33094009_33094931
Length = 923
Score = 965 bits (499), Expect = 0.0
Identities = 514/523 (98%), Gaps = 7/523 (1%)
Strand = Plus / Plus
Query: 1 atccttatgcaaataaggcatccccaggaccctggccccagccaatgatgtacactcact 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 208 atccttatgcaaat-------ccccaggaccctggccccagccaatgatgtacactcact 260
Query: 61 ccccaaaggtttaaatagcctttgttttcccctttaaccaagctgcctcactgaagcctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccccaaaggtttaaatagcctttgttttcccctttaaccaagctgcctcactgaagcctg 320
Query: 121 tttctagacagcccagagtctgttgttggctcacttgatgcttgaggtctctattcctga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttctagacagcccagagtctgttgttggctcacttgatgcttgaggtctctattcctga 380
Query: 181 caccccaccccaccccatcccatttcctgccttacttccccaggtaggattcaccagttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 caccccaccccaccccatcccatttcctgccttacttccccaggtaggattcaccggttg 440
Query: 241 tgactacaggctgtcgtgcagggcagggaatgatgggtgtcagatcctctgtgttagcat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgactacaggctgtcgtgcagggcagggaatgatgggtgtcagatcctctgtgttagcat 500
Query: 301 taattaggcatttccactggcctgctctcagggacctagtggtagcagcttacatcatca 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 taattaggcatttccactggcctgctctcagggacctagtggtagcagtttacatcatca 560
Query: 361 tctgctgctgtcaggcacaccaggtgcagtgcataaaaaggccttggccacccccagatc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctgctgctgtcaggcacaccaggtgcagtgcataaaaaggccttggccacccccagatc 620
Query: 421 tgcctgcctgtctgtcttgtctgatctctctgtctctcatgttcccactccaagctgctc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgcctgcctgtctgtcttgtctgatctctctgtctctcatgttcccactccaagctgctc 680
Query: 481 tttcactctcccccatctcccaataaacctcttgccatacatc 523
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttcactctcccccatctcccaataaacctcttgccatacatc 723
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space: 468369
Effective search space used: 468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
