BAC Information

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BAC

Clone NameMSMg01-374N13
Chromosome5 (Build37)
Map Location 47,854,572 - 47,855,080
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100040865, LOC100040876, Slit2, 4933428G09Rik, Kcnip4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374N13.T7 (MSMg01no374_n13.b1)MSMg01-374N13.TJ (MSMg01no374_n13.g1)
ACCAG480542AG480543
length755749
length of high quality
(start - end)		511 (72 - 582)221 (56 - 276)
definitionCHROMAT_FILE: MSMg01no374_n13.b1 PHD_FILE: MSMg01no374_n13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:13 2005CHROMAT_FILE: MSMg01no374_n13.g1 PHD_FILE: MSMg01no374_n13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCC
GCGGAANTCATAGATTCTCGAACAAAAATTATTAATCACAGTATGATATA
GTAAAGTGCACAGTAAATATTATAATAAAATATCTAAAATATTCATCTTA
TAAGTAACCAATAACAGATCTTATTCATGTGTTTGTCTTTTAACTTATTA
AACATTTACCATGTTCCAGGAACTTTCTTCCTAGATATCATAACACTCAA
AAGTCTATAATAAAAGAGTAGACATTAACTTCGGAATGACATACTTATAT
AAATCACAATTTTATTTCAGTAAAATAATTAATTAAAAAAAATCCTCCAA
AGAAATAAAAAGCAAAAAAATGTTCAATAAAAATGTAAAACATTAAAGTA
TAAGATATAAAAAATTATCTTTAATAATCAATTCTTTTTATTTCTATATT
TTTACCCTTAGCAATCTGTTTATCATATTTCTTAAAGGCTTTTGTGTTGA
AGGTGGAAAAAAACTAAGTTTTATAGCTAGTAAATAGTATATTCTTTCTT
AAACTGGAATGAGTGACCACTGATAGCTGATGATAGATAGAGTTTGTTTT
CTCTTAAGAGTCTGGTCCTTCATGAGCCATCCATGCTCCACTGGATAACC
ACACATCCAAGAATATATCAGTAGAACAAAGTGGACTTTATAGCTAGAGA
AGCCACTATTACTCTTTCCCTAAAATAAGTAATATAATGCTATATTCTAA
AAAAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCTACTCTAAAACCATCCAGACCTTGACTTTTTTTATAGGCTTGT
TTGTTTGTTTGTTCCACTAGGATTCATAAGTCTGTTTAAGTTGTTTATCT
TTTCTTGATTTAACTATGGTAAGTGGTATATATACATCAAGTAAACTATC
CATTTCTTTTATATTTTTTAATTTTGTGGACTGGAGGGTATTAATGCATT
TACTTATGATTCCCGGGGTTTCTTTGGGGTTTTTGTTGGTTGACCTACTT
TTATTTCTGGTNNNTGTANATGGATCTCTTCATTTTGGCTTCTGGGNTAT
TTGGGCTAATTTTGTTAATGGCCTGATTTCCCCAAAAGCCCAAACTTTGG
TAACCTTTTTTTGGGACAAGGTTTGGGTTCCCCCTTAATGGGAGGGAAGC
CCGGGAGTCCCTAATTTCCCATAAGGGGGACATTTTGGAAGCTATTTTTT
TTTTCTCTAAAAATTTCTAAGGGAAAAAATTTTGATTTAAAACCCCACAA
CGGGGGGGAAAAAAAAAATTTCTTTAATATTGGGGGGGAGAGGCCTTTTT
TTTGGGGGGGGAAAAAAAATTTTTTCAAAAAAAGCTATTCCCCCCAATTT
TTTCTTTTCCCCTCGAGAGAGGGGGCACCACCTTTCTTTTCTTCAGGGGG
GGGGGTTTTTTTTTTATTTCCCCANAATTTGGGGGGACCAACAATCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_n13.b1 MSMg01no374_n13.b1 CHROMAT_FILE:
MSMg01no374_n13.b1 PHD_FILE: MSMg01no374_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:13 2005
         (511 letters)



>mm_chr5_47854372_47855282
          Length = 911

 Score =  895 bits (463), Expect = 0.0
 Identities = 499/511 (97%), Gaps = 2/511 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaaaaattattaatcacagtatgatatagtaaagtgcacagtaaatattataataaaat 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaaaagttattaatcacagtatgatatagtaaagtgcacagtaaatattataataaaat 260

                                                                       
Query: 61  atctaaaatattcatcttataagtaaccaataacagatcttattcatgtgtttgtctttt 120
           ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 atctaaaatattcattttataagtaaccaataacagatcttattcatgggtttgtctttt 320

                                                                       
Query: 121 aacttattaaacatttaccatgttccaggaactttcttcctagatatcataacactcaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 aacttattaaacatttaccatgttccaggaactttcttcctagatatcataacacgcaaa 380

                                                                       
Query: 181 agtctataataaaagagtagacattaacttcggaatgacatacttatataaatcacaatt 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 agtctataataaaagagtagacattaactttggaatgacatacttatataaatcacaatt 440

                                                                       
Query: 241 ttatttcagtaaaataattaattaaaaaaaatcctccaaagaaataaaaagcaaaaaaat 300
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 441 ttatttcagtaaaataattaattcaaaaaaatcctccaaagaaataaaaagcaaaaaa-t 499

                                                                       
Query: 301 gttcaataaaaatgtaaaacattaaagtataagatataaaaaattatctttaataatcaa 360
           ||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||
Sbjct: 500 gttcaataaaaatgtaaaacaataaagtataaaatataaaaaattatcttcaataatcaa 559

                                                                       
Query: 361 ttctttttatttctatatttttacccttagcaatctgtttatcatatttcttaaaggctt 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 560 ttctttttatttctatatttttacccttagcaatctgtttatcatatttcttaaagactt 619

                                                                       
Query: 421 ttgtgttgaaggtggaaaaaaactaagttttatagctagtaaatagtatattctttctta 480
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttgtgttgaaggtg-aaaaaaactaagttttatagctagtaaatagtatattctttctta 678

                                          
Query: 481 aactggaatgagtgaccactgatagctgatg 511
           |||||||||||||||||||||||||||||||
Sbjct: 679 aactggaatgagtgaccactgatagctgatg 709


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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