BAC Information

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BAC

Clone NameMSMg01-374N23
Chromosome16 (Build37)5 (Build37)
Map Location 40,101,863 - 40,102,35114,761,438 - 14,761,843
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC667400
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374N23.T7 (MSMg01no374_n23.b1)MSMg01-374N23.TJ (MSMg01no374_n23.g1)
ACCAG480562AG480563
length782748
length of high quality
(start - end)		494 (51 - 544)406 (57 - 462)
definitionCHROMAT_FILE: MSMg01no374_n23.b1 PHD_FILE: MSMg01no374_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:15 2005CHROMAT_FILE: MSMg01no374_n23.g1 PHD_FILE: MSMg01no374_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:15 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(40,101,863 - 40,102,351)(14,761,438 - 14,761,843)
sequence
NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCAAGGTTGGTTTTATATATTTTATTAAGCTATTTTATTTA
GCATAGGGATAATAATTAACTATGTGGCTATGATTTATTAAATTTGCATA
TTTAATTTAACCACATCAACACATTTAAGACTAGGATTTTGTCAATAAAT
AAATTAGAAAAAGAATAACAATATATTTTCCACTCTCAGTGTAGCAAGGC
ACCTTTCTAAAAATATAGGTCAGTACCTAAGATGTCCTAGGATGAAAAAG
ATCTAGGAAAAAATTAATGAAAGTTGTTGAAGTGAATATATATTCAAGTT
CTTTATTTTAATGAAACCCAAGTTACCATTTTAACATATGTTTATATGTA
TTATATGTGTATGTTGTGTTTATGAATGTTTACAAAGGATAGTCAAATAT
AGGTAAAATATGAGCTGAAAGGGCTCATATTCTCTGATGTTCAGAAAAGT
AAAGCTACAAGTTAATACCACAATACATACAAAAAATAACTAANATGAAA
GTTTTTCATAGTGTTGACAGCGACATACAACAGTGGCTACTCTTATCCAT
GATAATATTGGATGGAATATTATTGGATGGATAATAATTGGAGGGAAAAT
ACGATAAAAAGTTCTCCTCCCCTTTCTCTTCCCTTTTATTTCCCTACTCT
CCCTCCTTTCACATTCCTCTTTGCCCCTCTTCCACCTCCTTTTCCCTACT
CCCCACTACCCCCTGTCTCTTCATTTTTCCAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXAGTAAATTGTCATGGGTCAACAGAGGAGAGGGAGATATCTTAAG
AAAGGAAGAATGGAAAGGAGAGGGTCATGGGATACATGTGACATAAACAA
ATGGAAAGAGAGTTTTGGGGAGCAAGGGGCCCATAAAAATGGCACTAGGG
AGGGCAATGTGGTCGAGGGATGATTTGAATAGAATGTAATGATACATAGA
TATGCAAATGCCATAATGAAATCCAATAGTAGGTACCTTAAAATTTCTAG
ACTAGTGTGATAAAGCAAGGATGCTCTAGCTTAATCTGTTATATATAAAA
AAGAGAGAGATGCATAATAGCTTAAATGATTTGCTTAACACCAGGAGACT
GCTGAAGATTCTATTTGCATACAGTAAATAACCATATAGTGTTAAGCAAT
ATCTAAGTCTAAGAATGGTGATATTATTCAGAGTTGCTGGGATGCCATCC
TGTTATCTGATGGAAAGTAAAGCATACAGGAAACATTTTTGAAATATAGT
AAAGAACCATTTTATTGGAGGAATGGTGGGGCCTGTTTTCCCAGAATTAA
AAAAACCTTTATTCGGTTGCCTGGGGAAGAAATTCCCTGAAGGAGGAATT
TTCCCCCACAAAAAATGGTTCAAAAGGCCTTTAGTTCCTTAGAGGGCTTT
GAACACAAACACGTCTATTAAAACAAGGGCCACACTAAAGATTCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_n23.b1 MSMg01no374_n23.b1 CHROMAT_FILE:
MSMg01no374_n23.b1 PHD_FILE: MSMg01no374_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:15 2005
         (494 letters)



>mm_chr16_40101659_40102552
          Length = 894

 Score =  938 bits (485), Expect = 0.0
 Identities = 488/489 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaaggttggttttatatattttattaagctattttatttagcatagggataata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 gaattccaaggttggttttatatattttattaagctattttatttagcatagggataata 634

                                                                       
Query: 65  attaactatgtggctatgatttattaaatttgcatatttaatttaaccacatcaacacat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 attaactatgtggctatgatttattaaatttgcatatttaatttaaccacatcaacacat 574

                                                                       
Query: 125 ttaagactaggattttgtcaataaataaattagaaaaagaataacaatatattttccact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ttaagactaggattttgtcaataaataaattagaaaaagaataacaatatattttccact 514

                                                                       
Query: 185 ctcagtgtagcaaggcacctttctaaaaatataggtcagtacctaagatgtcctaggatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ctcagtgtagcaaggcacctttctaaaaatataggtcagtacctaagatgtcctaggatg 454

                                                                       
Query: 245 aaaaagatctaggaaaaaattaatgaaagttgttgaagtgaatatatattcaagttcttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 aaaaagatctaggaaaaaattaatgaaagttgttgaagtgaatatatattcaagttcttt 394

                                                                       
Query: 305 attttaatgaaacccaagttaccattttaacatatgtttatatgtattatatgtgtatgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 attttaatgaaacccaagttaccattttaacatatgtttatatgtattatatgtgtatgt 334

                                                                       
Query: 365 tgtgtttatgaatgtttacaaaggatagtcaaatataggtaaaatatgagctgaaagggc 424
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 333 tgtgtttatgaatgtttacaaaggatagtcgaatataggtaaaatatgagctgaaagggc 274

                                                                       
Query: 425 tcatattctctgatgttcagaaaagtaaagctacaagttaataccacaatacatacaaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tcatattctctgatgttcagaaaagtaaagctacaagttaataccacaatacatacaaaa 214

                    
Query: 485 aataactaa 493
           |||||||||
Sbjct: 213 aataactaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space:   427856
Effective search space used:   427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no374_n23.g1 MSMg01no374_n23.g1 CHROMAT_FILE:
MSMg01no374_n23.g1 PHD_FILE: MSMg01no374_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:15 2005
         (406 letters)



>mm_chr5_14761238_14762043
          Length = 806

 Score =  777 bits (402), Expect = 0.0
 Identities = 405/406 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtaaattgtcatgggtcaacagaggagagggagatatcttaagaaaggaagaatggaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 agtaaattgtcatgggtcaacagaggagagggagatatcttaagaaaggaagaatggaaa 547

                                                                       
Query: 61  ggagagggtcatgggatacatgtgacataaacaaatggaaagagagttttggggagcaag 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ggagagggtcatggaatacatgtgacataaacaaatggaaagagagttttggggagcaag 487

                                                                       
Query: 121 gggcccataaaaatggcactagggagggcaatgtggtcgagggatgatttgaatagaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gggcccataaaaatggcactagggagggcaatgtggtcgagggatgatttgaatagaatg 427

                                                                       
Query: 181 taatgatacatagatatgcaaatgccataatgaaatccaatagtaggtaccttaaaattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 taatgatacatagatatgcaaatgccataatgaaatccaatagtaggtaccttaaaattt 367

                                                                       
Query: 241 ctagactagtgtgataaagcaaggatgctctagcttaatctgttatatataaaaaagaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ctagactagtgtgataaagcaaggatgctctagcttaatctgttatatataaaaaagaga 307

                                                                       
Query: 301 gagatgcataatagcttaaatgatttgcttaacaccaggagactgctgaagattctattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gagatgcataatagcttaaatgatttgcttaacaccaggagactgctgaagattctattt 247

                                                         
Query: 361 gcatacagtaaataaccatatagtgttaagcaatatctaagtctaa 406
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gcatacagtaaataaccatatagtgttaagcaatatctaagtctaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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