TTCCTTCTCGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTTGATCTATTCTAAGCCCCATTTTTTATTGGGTTATT
TGATTTTCTGGAGTCCACCCTCTTCATTTCTTTATGTATATTGGATATTA
GTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGT
GGTCTTTTTGTCTTATTGACAGTATCTTTTGCCTTGCAGAAACTTTGCAG
TTTCATGAGGTCCCATTTGTCAATTCTTGATCTTACAGCACAAGCCATTG
CTGTTCTATTCAGGATTTTTTTTCCCTGTGCCCATATCTTCAAGGCTTTT
CCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTT
CCTTGATCCACTTAAATTTGACCTTAGTACAAGGAGATAGGAATGGATCA
ATTCGAATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCATTTGTT
GAAAATGCTGTCTTTCTTCCAGTGGATGGTTTTAGTTCCCTTGTCAAAGG
TCCAGTGACCATAAGTGTGCGGGTTCATTTCTGGGCCTTCAATTCTATCC
CATTTGTTTACTTCCTATGGCTCTTAAACACGGACTCAGGCTAACTTTTT
TCTTATTTGTCCTGTTTGTACAGTTTTTTTGTTTCACGGATGGGATTTCC
TTCCTAACAATTCTTTTATTTTTTTTAAAAAACCTTTGCTTTCCCACACG
CTTTTTTTTTAACTCCTCA

NNTTTTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGATTTCTCTAAGTAG
CTAAAAGAAAAGAAAAGAAAGAAAAAAAAAAACCTTGCCAAATATGCTAA
TTATTTTTTGAAGGCAACATGTCTGAGCGAGTCAAGCCTAAGAGCTAAGA
TAACAATTCACTTATGCTTGTTTCCTCTTGCTGAATAATGCTGTGAAAAA
TAGTCCAAAGTGAAGTAAGTTGTGCCGTGGTAGATTGGCAAGTGACAGCT
CCCTCCATTAATTTTGTATTCCTTATTTCACTCTATGTTACTCCCTCAGG
CTTGAGTTCCATATAAGTCTTGTCACAGTCTGTATCTGTCAACACAAATG
AATGAACAACTTTCCAATATGTTCCTGACAGCAGGACTTCAACCATGTGA
GAAGACTGAAGAGTACCCCTTGATTGGCATTTCAAAGATCCCTCATCAGC
TCCACAGTTATTTCAATCCTTGGTGAAGAACTCAGGTCTTCCAAGGTGGG
CATATTAACTATTTCCGGGGTGAATGTTTTTATATGGATTTTGGCAAATT
ATATTTATACTTTGGGAAATGCACTACCTATACACTGCAATTTGGTGGAT
ATCTTGTATCCTTTTTGGTCCTTTTTGCCTCCTCATTTTCAACTTCCTTT
CATTTTTCCCCCGCTTCCTTTCCTCCCTTTTTCCCATATACCCCCATTAT
ACACTTTCTTTTCTTTTCCCTTCTCG

Query= MSMg01no375_e06.g1 MSMg01no375_e06.g1 CHROMAT_FILE:
MSMg01no375_e06.g1 PHD_FILE: MSMg01no375_e06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:48 2005
         (445 letters)



>mm_chr5_60701822_60702666
          Length = 845

 Score =  820 bits (424), Expect = 0.0
 Identities = 442/452 (97%), Gaps = 7/452 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagatttctctaagtagctaaaagaaaagaaaag-------aaagaaaaaaaaaaacct 53
           |||||||||||||||||||||||||||||||||||       ||| ||||||||||||||
Sbjct: 194 caagatttctctaagtagctaaaagaaaagaaaagaaaaaaaaaaaaaaaaaaaaaacct 253

                                                                       
Query: 54  tgccaaatatgctaattattttttgaaggcaacatgtctgagcgagtcaagcctaagagc 113
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tgccaaatctgctaattattttttgaaggcaacatgtctgagcgagtcaagcctaagagc 313

                                                                       
Query: 114 taagataacaattcacttatgcttgtttcctcttgctgaataatgctgtgaaaaatagtc 173
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 taagataacaattcacttatgcttgtttcctcttgctgaataatgctgtgaaaaatagtc 373

                                                                       
Query: 174 caaagtgaagtaagttgtgccgtggtagattggcaagtgacagctccctccattaatttt 233
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 cgaagtgaagtaagttgtgccgtggtagattggcaagtgacagctccctccattaatttt 433

                                                                       
Query: 234 gtattccttatttcactctatgttactccctcaggcttgagttccatataagtcttgtca 293
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gtattccttatttcactctatgttactccctcaggcttgagttccatataagtcttgtca 493

                                                                       
Query: 294 cagtctgtatctgtcaacacaaatgaatgaacaactttccaatatgttcctgacagcagg 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 cagtctgtatctgtcaacacaaatgaatgaacaactttccaatatgttcctgacagcagg 553

                                                                       
Query: 354 acttcaaccatgtgagaagactgaagagtaccccttgattggcatttcaaagatccctca 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 acttcaaccatgtgagaagactgaagagtaccccttgattggcatttcaaagatccctca 613

                                           
Query: 414 tcagctccacagttatttcaatccttggtgaa 445
           ||||||||||||||||||||||||||||||||
Sbjct: 614 tcagctccacagttatttcaatccttggtgaa 645


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space:   363225
Effective search space used:   363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)