Query= MSMg01no375_i24.b1 MSMg01no375_i24.b1 CHROMAT_FILE:
MSMg01no375_i24.b1 PHD_FILE: MSMg01no375_i24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:11 2005
(494 letters)
>mm_chr5_58315285_58316178
Length = 894
Score = 911 bits (471), Expect = 0.0
Identities = 487/493 (98%), Gaps = 4/493 (0%)
Strand = Plus / Minus
Query: 5 gaattcatgtgttcttagcacagagcattggaatccaatagaggatttagcagggccaag 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gaattcatgtgttctgagcacagagcattggaatccaatagaggatttagcagggccaag 535
Query: 65 agaaaactcacattcttagctaaattaaatgacaatgaacaattgaaaatttttatattt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 agaaaactcacattcttagctaaattaaatgacaatgaacaattgaaaatttttatattt 475
Query: 125 aatattacaaatctgacttctgattttattctatatagaaaaa-gaaagtatattcaaga 183
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 474 aatattacaaatctgacttctgattttattctatatagaaaaaggaaa-tatattcaaga 416
Query: 184 atgactttaacaactgtatagacaaataagcatttaattaatgatattgtaataatgctt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 atgactttaacaactgtatagacaaataagcatttaattaatgatattgtaataatgctt 356
Query: 244 agttacagtgtttgtgagcacacatgtgtgtacatgtt--tgtgtgtgtgtgtacatgtg 301
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 355 agttacagtgtttgtgagcacacatgtgtgtacatgtttgtgtgtgtgtgtgtacatgtg 296
Query: 302 tgtgtgtatgcatgcttatttgtatataattgtataacagctcatggagttagctgagat 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 tgtgtgtatgcatgcttatttgtatataattgtataacagctcatggagttagctgagat 236
Query: 362 aatgacagtcatagttttgtaccaataaccagggaaatggcatgaaaatgtatacaacat 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 aatgacagtcatagttttgtaccaataaccagggaaatggcatgaaaatgtatacaacat 176
Query: 422 ctcttgctcagactgatgaggcttgagctatagctcaagacttaattgtttgcatgcaaa 481
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 175 ctcttgctcagactgatgaggcttgagctatagctcaagacttaactgtttgcatgcaaa 116
Query: 482 tataacaaattat 494
|||||||||||||
Sbjct: 115 tataacaaattat 103
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space: 427856
Effective search space used: 427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no375_i24.g1 MSMg01no375_i24.g1 CHROMAT_FILE:
MSMg01no375_i24.g1 PHD_FILE: MSMg01no375_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:11 2005
(435 letters)
>mm_chr5_58167115_58167949
Length = 835
Score = 828 bits (428), Expect = 0.0
Identities = 433/435 (99%)
Strand = Plus / Plus
Query: 1 catcatctttgactccctccacctttcctcctttgctttattgaattgaacttgaatgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catcatctttgactccctccacctttcctcctttgctttattgaattgaacttgaatgaa 260
Query: 61 atcttttatttgtctaagtctatttctgtctggtaaggaagttgaaattgatcatgcctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcttttatttgtctaagtctatttctgtctggtaaggaagttgaaattgatcatgcctt 320
Query: 121 gactttgtgggccagcagagaaccatgacattccagagtattgattttgtggtgttaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gactttgtgggccagcagagaaccatgacattccagagtattgattttgtggtgttaaag 380
Query: 181 ggtgacagatccagtgttaaagtgccaggagagaattggttttcagattgtacaccataa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtgacagatccagtgttaaagtgccaggagagaattggttttcagattgtacaccataa 440
Query: 241 gcattcttggcttttgctgagccatgcctggctttttaaagtagaggatgaaatagtaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcattcttggcttttgctgagccatgcctggctttttaaagtagaggatgaaatagtaat 500
Query: 301 acgtagtttttactgcatacttttaaaaatattaatttctttctatatttgcttatttac 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 acgtagtttttactgcatacttttaaaaatattaatttctttctttatttgcttatttac 560
Query: 361 ttattcatttattagtgtatatatatgcatatatatatgtatgtatgtatgtatgtatct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttattcatttattagtgtatatatatgcatatatatatgtatgtatgtatgtatgtatct 620
Query: 421 atggnttttcaagca 435
|||| ||||||||||
Sbjct: 621 atggtttttcaagca 635
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space: 351876
Effective search space used: 351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
