NNGGTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTGGTCATTTTTCATCTGCATTTCCATGATGAACAAGGGTG
ACTAGGAATGTCTTTCTCCTTTTGCCTGTTGGCTTTGTTTGTTTCCACGC
ATGGAACCTGCTATCTTATTACTTACAGTTTGTTATCATTTGAATATCTT
TCTTACTATTTCTGTGCATTTTTACTGCCCCTGTTTTTTTTTTTTTCTGT
TTACTGCTGGCTTGGAAGATCTGCCTGAGGAAGGTTATTCCCTGCTGCAG
CAATGCAAAGGAAGAACCAATCCTACCGATTTACAATTTGGTCCAATCAG
GATGCTGACACAAGGGAAGAGAGGAAAGGACAGCCATTTAGCATTTTACT
GGAGCCACACGCTTCTACATAATTCAGGAGATTTTTCCTCTACAGATAAA
ACATGGTGCCTTGGAGAAACCCCAGTGCCTTACACCACATATCATAAGTA
GACATAGTGAAATTAGCAGTGCATTAAATCTTTCTTTCTGATGATCTCCT
GTAAGCTCCATATTCTTCTTCACAGTGTTGTAGTACATTAGTGCTTATAT
GTTCTTGACGTGTCACCCACCATCTGGGAAATGTGCCTTGGCCTATTCCA
GTCTATATGCCCCCTTTGCTCAAAATGAGTCCCTGAATTTTCCAATTGCT
TACTATCAAGTTTGCCCCCAACCTACCCTCCTTCTCTATATTAAATAAAC
GCCCAGCTCGTTTTTTC

NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCACCAGTAAAGAAGGAGTGTT
CCTCTTTCTTCACATCCTCACCAACATGTGCTGTCACTTTGAGGGTTTGA
TCTTAGCTGTTCTGGTATGTATAAGGTTGAATATCATGAACTTTTAGATT
TTCATTTTCCTGATGACTGAGGATGTTGAACATTTCTTTAAGTGTTTCTT
GACCATTCAAGAGTCCTCTGTTGAGAATTTTCTGTTTAGCTCTGTACTCC
ATTGTTTAATTGTTTTTTTGTTTGTTTGGTTGATTGGTTGGTTTTTTTGC
CCTCTTCTCTTTTTTTTCTCCTCCCCTCCTCTCTTTCTCCTCTCCTTTTC
TCTCTTCTTTCTCTTCCCCCCCCCTCTTTTCTCTTTTCCCTTTTTTCTCT
TCTTCTTTCCCTTTTTCTTCTCTTCTCTCCTTTTTTTTCTTCCTTCTTTT
TCCCTTTTCTTCCTTTCCTCTTCTTTTTTCTCCTTCTCTTCCTCCTTCCT
TCTTTTTTTTTTTTCTTTTTCTTTCTTTCCCCTCCCTCTTCTTCTTCCTT
TTTTCTTTCTTTTTCTTCTCTTCTTTTTCCCCCTTCTTTTTCTCCCTTTC
CTCTCCTTCTTCTCCTTTTTCTCCCTTTCTTTCTTTTTTCTCCTTCTTTC
TTCTCTTTTTTCTCTCTCTTCTTTCTTTTTTTTTTTTTTCTTTTTTTTCT
TCTATCTTTCTTTTCTTTC

Query= MSMg01no375_k13.b1 MSMg01no375_k13.b1 CHROMAT_FILE:
MSMg01no375_k13.b1 PHD_FILE: MSMg01no375_k13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:19 2005
         (502 letters)



>mm_chr5_48212075_48212976
          Length = 902

 Score =  905 bits (468), Expect = 0.0
 Identities = 498/518 (96%), Gaps = 16/518 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctgcatttccatgatgaacaagggtgactaggaatgtctttctccttttgcctgttgg 60
           |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 879 atctgcatttccatgatgaacaagggcgactagcaatgtctttctccttttgcctgttgg 820

                                                                       
Query: 61  ctttgtttgtttccacgcatggaacctgctatcttattacttacagtttgttatcatttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 ctttgtttgtttccacgcatggaacctgctatcttattacttacagtttgttatcatttg 760

                                                                       
Query: 121 aatatctttcttactatttctgtgcatttttactgcccctg----------------ttt 164
           |||||||||||||||||||||||||||||||||||||||||                |||
Sbjct: 759 aatatctttcttactatttctgtgcatttttactgcccctgttttttttttttttttttt 700

                                                                       
Query: 165 ttttttttttctgtttactgctggcttggaagatctgcctgaggaaggttattccctgct 224
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 ttttttttttctgtttactgctggcttggaagatctgcctgaggaaggttattccctgct 640

                                                                       
Query: 225 gcagcaatgcaaaggaagaaccaatcctaccgatttacaatttggtccaatcaggatgct 284
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 gcagcaatgcaaaggaagaaccaatcctaccgatttacaatttggtccaatcaggatgct 580

                                                                       
Query: 285 gacacaagggaagagaggaaaggacagccatttagcattttactggagccacacgcttct 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 gacacaagggaagagaggaaaggacagccatttagcattttactggagccacacgcttct 520

                                                                       
Query: 345 acataattcaggagatttttcctctacagataaaacatggtgccttggagaaaccccagt 404
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 519 acataattcaggagatttttcctctacagataaaacacggtgccttggagaaaccccagt 460

                                                                       
Query: 405 gccttacaccacatatcataagtagacatagtgaaattagcagtgcattaaatctttctt 464
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 459 gccttacaccacatatcataagtagacatagtgaaattagcagtgcattaaagctttctt 400

                                                 
Query: 465 tctgatgatctcctgtaagctccatattcttcttcaca 502
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tctgatgatctcctgtaagctccatattcttcttcaca 362


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space:   438864
Effective search space used:   438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)