Query= MSMg01no375_k21.b1 MSMg01no375_k21.b1 CHROMAT_FILE:
MSMg01no375_k21.b1 PHD_FILE: MSMg01no375_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:21 2005
(443 letters)
>mm_chr5_82689538_82690380
Length = 843
Score = 727 bits (376), Expect = 0.0
Identities = 421/436 (96%), Gaps = 1/436 (0%)
Strand = Plus / Plus
Query: 8 ttcagttagaatttacgaataattactgaagtataaagataataagagggtggagagggg 67
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttcagttggaatttaagaataattactgaagtataaagataataagagggtggagagggg 267
Query: 68 aaaggaatgcagttcctagtgtttatttagttacatatacaaggcaatatgattcttcac 127
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 268 aaaggaatgtagttcctagtgtttatttagttacatatacaaggcgatatgattcttcac 327
Query: 128 agatattagttatagtttctaatacacatttgaaatacaatgaactcaataaacatgatt 187
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 328 agatattagttatagtttctaagacacatttgatatacaatgaactcaataaacatgatt 387
Query: 188 tgactgactgaatgtatgcatgtaattgtgcataagtttatagtacccaaatgggatagt 247
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 388 tgactgactgaatgtatgcatgtaattgtgtataagtttatagtacccaaatgtgatagt 447
Query: 248 tcataaatacctgtaactccagttacaagtgaatctgacccctctaatatatggaagctt 307
||| ||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 448 tcacaaatatctgtaactccagttacaagt-aatctgacccttctaatatatggaagctt 506
Query: 308 tagcattcatatgcatcaatgtttgctgtttatcaggaggtaagcctgcaacgggaactg 367
||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||
Sbjct: 507 tagcattcatatgcatcaatgtttgctgtttatcatgagttaagcctgcaatgggaactg 566
Query: 368 aaaatgtgctcaatgctaatgatattctttttcatcatctcataacactgataagagttt 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 aaaatgtgctcaatgctaatgatattctttttcatcatctcataacactgataagagttt 626
Query: 428 ccatacctggagtttc 443
||||||||||||||||
Sbjct: 627 ccatacctggagtttc 642
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space: 360689
Effective search space used: 360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no375_k21.g1 MSMg01no375_k21.g1 CHROMAT_FILE:
MSMg01no375_k21.g1 PHD_FILE: MSMg01no375_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:21 2005
(253 letters)
>mm_chr5_82835878_82836530
Length = 653
Score = 340 bits (176), Expect = 4e-98
Identities = 199/214 (92%), Gaps = 12/214 (5%)
Strand = Plus / Minus
Query: 1 atcagggccttgatattgcgtgtttccagaactttgggaagtaaatgtctgcggttaatc 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 305 atcagggccttgatattgcgtgtttccagaactgtgggaagtaaatgtctgcggttaatc 246
Query: 61 tatcggaagttttattgaaattccttttagcatcccaggaggattcacacacacacacac 120
||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 245 tatcggaagttttattgaaattccttttagcatcccaggaggatt------------cac 198
Query: 121 acacacacacacacacacacacacacacacacacacacacacacagagagagagagagag 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 197 acacacacacacacacacacacacacacacacacacacacacagagagagagagagagag 138
Query: 181 agggagagagagagagagagagagagagagaaag 214
|| |||||||||||||||||||||||||||||||
Sbjct: 137 agagagagagagagagagagagagagagagaaag 104
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 125
Number of extensions: 49
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space: 157136
Effective search space used: 157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
